Variant report

Variant	rs60172465
Chromosome Location	chr15:54704692-54704693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1858351	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858352	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55637972	1.00[AFR][1000 genomes]
rs55804420	1.00[AFR][1000 genomes]
rs55814452	1.00[AFR][1000 genomes]
rs55858902	1.00[AFR][1000 genomes]
rs55864624	1.00[AFR][1000 genomes]
rs55953107	1.00[AFR][1000 genomes]
rs56116100	1.00[AFR][1000 genomes]
rs56696332	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57226140	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58025043	1.00[AFR][1000 genomes]
rs58895605	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62010057	1.00[AFR][1000 genomes]
rs62010058	1.00[AFR][1000 genomes]
rs62011965	1.00[AFR][1000 genomes]
rs62011989	1.00[AFR][1000 genomes]
rs62011991	1.00[AFR][1000 genomes]
rs62022398	1.00[AFR][1000 genomes]
rs62022401	1.00[AFR][1000 genomes]
rs62022405	1.00[AFR][1000 genomes]
rs62022406	1.00[AFR][1000 genomes]
rs62022409	1.00[AFR][1000 genomes]
rs62022411	1.00[AFR][1000 genomes]
rs62022413	1.00[AFR][1000 genomes]
rs62022414	1.00[AFR][1000 genomes]
rs62022419	1.00[AFR][1000 genomes]
rs72734781	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72734791	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv904230	chr15:54685463-54779312	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv457150	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv569501	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv457151	chr15:54699197-54787358	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv569502	chr15:54699197-54787358	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv904231	chr15:54703195-54771880	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv904232	chr15:54703195-54787358	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv904233	chr15:54703195-54797177	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54704600-54713600	Weak transcription	Aorta	Aorta

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