Variant report

Variant	rs58025043
Chromosome Location	chr15:54810715-54810716
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs16974787	0.87[EUR][1000 genomes]
rs16974800	0.87[EUR][1000 genomes]
rs17237683	0.87[EUR][1000 genomes]
rs17818572	0.87[EUR][1000 genomes]
rs1818706	0.87[EUR][1000 genomes]
rs57273810	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58513964	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58750441	0.86[EUR][1000 genomes]
rs58895605	1.00[AFR][1000 genomes]
rs59729248	0.86[EUR][1000 genomes]
rs60172465	1.00[AFR][1000 genomes]
rs60912017	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022200	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022201	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022202	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022204	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022205	0.91[EUR][1000 genomes]
rs62022206	0.91[EUR][1000 genomes]
rs62022207	0.87[EUR][1000 genomes]
rs62022209	0.87[EUR][1000 genomes]
rs62022210	0.87[EUR][1000 genomes]
rs62022212	0.87[EUR][1000 genomes]
rs62022213	0.87[EUR][1000 genomes]
rs62022398	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022400	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62022401	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62022402	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022403	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62022404	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62022405	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62022406	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62022409	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022410	0.86[EUR][1000 genomes]
rs62022411	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022412	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022413	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022414	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022416	0.86[EUR][1000 genomes]
rs62022417	0.86[EUR][1000 genomes]
rs62022419	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022420	0.86[EUR][1000 genomes]
rs62022423	0.86[EUR][1000 genomes]
rs62022424	0.86[EUR][1000 genomes]
rs62022425	0.86[EUR][1000 genomes]
rs62022427	0.86[EUR][1000 genomes]
rs62022747	0.83[EUR][1000 genomes]
rs62022749	0.87[EUR][1000 genomes]
rs62022750	0.83[EUR][1000 genomes]
rs62022751	0.87[EUR][1000 genomes]
rs62022752	0.87[EUR][1000 genomes]
rs62022753	0.87[EUR][1000 genomes]
rs62022754	0.82[EUR][1000 genomes]
rs62022755	0.81[EUR][1000 genomes]
rs62022758	0.87[EUR][1000 genomes]
rs62022759	0.89[EUR][1000 genomes]
rs62023984	0.87[EUR][1000 genomes]
rs62023985	0.87[EUR][1000 genomes]
rs62023986	0.87[EUR][1000 genomes]
rs62023987	0.87[EUR][1000 genomes]
rs62023988	0.87[EUR][1000 genomes]
rs62023989	0.87[EUR][1000 genomes]
rs62023990	0.87[EUR][1000 genomes]
rs62023992	0.87[EUR][1000 genomes]
rs62023993	0.87[EUR][1000 genomes]
rs73421550	0.86[EUR][1000 genomes]
rs73421556	0.83[EUR][1000 genomes]
rs73421557	0.86[EUR][1000 genomes]
rs8024541	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8030914	0.91[EUR][1000 genomes]
rs8040295	0.87[EUR][1000 genomes]
rs8040699	0.87[EUR][1000 genomes]
rs8040891	0.87[EUR][1000 genomes]
rs8041462	0.87[EUR][1000 genomes]
rs9920446	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54807000-54820600	Weak transcription	Fetal Brain Male	brain
2	chr15:54809000-54814000	Weak transcription	Ovary	ovary
3	chr15:54809600-54811200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:54809600-54811200	Enhancers	Fetal Intestine Small	intestine
5	chr15:54809600-54811200	Enhancers	Fetal Kidney	kidney
6	chr15:54809600-54811800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:54809600-54814400	Enhancers	Fetal Lung	lung
8	chr15:54809800-54811600	Enhancers	Primary hematopoietic stem cells	blood
9	chr15:54809800-54811800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr15:54810200-54812000	Enhancers	Adipose Nuclei	Adipose
11	chr15:54810400-54810800	Enhancers	Rectal Smooth Muscle	rectum
12	chr15:54810400-54811000	Enhancers	Aorta	Aorta
13	chr15:54810600-54811000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:54810600-54811000	Enhancers	Colon Smooth Muscle	Colon
15	chr15:54810600-54811000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr15:54810600-54811200	Enhancers	Brain Hippocampus Middle	brain

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