Variant report

Variant	rs62022404
Chromosome Location	chr15:54815181-54815182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs16974787	0.89[EUR][1000 genomes]
rs16974800	0.89[EUR][1000 genomes]
rs17237683	0.89[EUR][1000 genomes]
rs17818572	0.89[EUR][1000 genomes]
rs1818706	0.89[EUR][1000 genomes]
rs57273810	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58025043	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58513964	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58750441	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59729248	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60912017	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022200	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022201	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022202	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022204	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022205	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022206	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022207	0.89[EUR][1000 genomes]
rs62022209	0.89[EUR][1000 genomes]
rs62022210	0.89[EUR][1000 genomes]
rs62022212	0.89[EUR][1000 genomes]
rs62022213	0.89[EUR][1000 genomes]
rs62022398	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022400	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022401	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022402	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022403	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62022405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022409	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62022410	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022411	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022412	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022413	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022414	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022416	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022417	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022419	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022420	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022423	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022424	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022425	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022427	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022747	0.85[EUR][1000 genomes]
rs62022749	0.89[EUR][1000 genomes]
rs62022750	0.85[EUR][1000 genomes]
rs62022751	0.89[EUR][1000 genomes]
rs62022752	0.89[EUR][1000 genomes]
rs62022753	0.89[EUR][1000 genomes]
rs62022754	0.84[EUR][1000 genomes]
rs62022755	0.83[EUR][1000 genomes]
rs62022756	0.81[EUR][1000 genomes]
rs62022758	0.89[EUR][1000 genomes]
rs62022759	0.91[EUR][1000 genomes]
rs62023984	0.89[EUR][1000 genomes]
rs62023985	0.89[EUR][1000 genomes]
rs62023986	0.89[EUR][1000 genomes]
rs62023987	0.89[EUR][1000 genomes]
rs62023988	0.89[EUR][1000 genomes]
rs62023989	0.89[EUR][1000 genomes]
rs62023990	0.89[EUR][1000 genomes]
rs62023992	0.89[EUR][1000 genomes]
rs62023993	0.89[EUR][1000 genomes]
rs73421550	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73421556	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73421557	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8024541	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030914	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8040295	0.89[EUR][1000 genomes]
rs8040699	0.89[EUR][1000 genomes]
rs8040891	0.89[EUR][1000 genomes]
rs8041462	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54807000-54820600	Weak transcription	Fetal Brain Male	brain
2	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
3	chr15:54812800-54815800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:54813600-54815800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr15:54814200-54815600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:54814400-54815400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:54814400-54815600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:54814400-54815600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:54814400-54816600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links