Variant report

Variant	rs62022425
Chromosome Location	chr15:54827753-54827754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs16974746	0.99[AFR][1000 genomes]
rs16974749	0.99[AFR][1000 genomes]
rs16974760	0.93[AFR][1000 genomes]
rs16974787	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16974800	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17237683	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17818572	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1818706	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28409858	0.93[AFR][1000 genomes]
rs28412587	0.86[EUR][1000 genomes]
rs28611313	0.86[EUR][1000 genomes]
rs28869904	0.80[EUR][1000 genomes]
rs57263358	0.85[AFR][1000 genomes]
rs57273810	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57885004	0.85[AFR][1000 genomes]
rs58025043	0.86[EUR][1000 genomes]
rs58494114	0.94[AFR][1000 genomes]
rs58513964	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58750441	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58836650	0.85[AFR][1000 genomes]
rs59729248	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60912017	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022200	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022201	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022202	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022204	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022205	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022206	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022207	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022209	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022210	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022212	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022213	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022398	0.92[EUR][1000 genomes]
rs62022400	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022401	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022402	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022403	0.81[EUR][1000 genomes]
rs62022404	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022405	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022406	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022409	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62022410	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022411	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022412	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022413	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022414	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022416	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022417	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022419	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022420	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022423	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022427	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022747	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022749	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022750	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022751	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022752	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022753	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022754	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022755	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022756	0.82[EUR][1000 genomes]
rs62022757	0.84[ASN][1000 genomes]
rs62022758	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022759	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62023984	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62023985	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62023986	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62023987	0.90[EUR][1000 genomes]
rs62023988	0.90[EUR][1000 genomes]
rs62023989	0.90[EUR][1000 genomes]
rs62023990	0.90[EUR][1000 genomes]
rs62023992	0.90[EUR][1000 genomes]
rs62023993	0.90[EUR][1000 genomes]
rs7176139	0.86[EUR][1000 genomes]
rs7177288	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7179699	0.87[AFR][1000 genomes]
rs73421550	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421552	0.99[AFR][1000 genomes]
rs73421555	0.87[AFR][1000 genomes]
rs73421556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421560	0.99[AFR][1000 genomes]
rs74014209	0.81[AFR][1000 genomes]
rs8024541	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8030914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040295	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8040699	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8040891	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8041462	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
2	chr15:54825600-54828400	Strong transcription	Fetal Lung	lung

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