Variant report

Variant	rs7176139
Chromosome Location	chr15:54825769-54825770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10518772	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs16974701	0.86[JPT][hapmap]
rs16974744	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs28412587	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28570166	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28611313	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28869904	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57288219	0.85[ASN][1000 genomes]
rs57409526	0.85[ASN][1000 genomes]
rs58750441	0.86[EUR][1000 genomes]
rs59729248	0.86[EUR][1000 genomes]
rs61120383	0.85[ASN][1000 genomes]
rs62022200	0.80[EUR][1000 genomes]
rs62022201	0.80[EUR][1000 genomes]
rs62022202	0.80[EUR][1000 genomes]
rs62022203	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62022204	0.80[EUR][1000 genomes]
rs62022205	0.80[EUR][1000 genomes]
rs62022206	0.80[EUR][1000 genomes]
rs62022208	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62022409	0.80[EUR][1000 genomes]
rs62022410	0.86[EUR][1000 genomes]
rs62022411	0.80[EUR][1000 genomes]
rs62022412	0.80[EUR][1000 genomes]
rs62022413	0.80[EUR][1000 genomes]
rs62022414	0.80[EUR][1000 genomes]
rs62022416	0.86[EUR][1000 genomes]
rs62022417	0.86[EUR][1000 genomes]
rs62022419	0.80[EUR][1000 genomes]
rs62022420	0.86[EUR][1000 genomes]
rs62022423	0.86[EUR][1000 genomes]
rs62022424	0.86[EUR][1000 genomes]
rs62022425	0.86[EUR][1000 genomes]
rs62022427	0.86[EUR][1000 genomes]
rs7168929	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7176858	0.86[JPT][hapmap]
rs7177288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7180034	0.85[JPT][hapmap]
rs73421550	0.86[EUR][1000 genomes]
rs73421556	0.84[EUR][1000 genomes]
rs73421557	0.86[EUR][1000 genomes]
rs74014207	0.85[ASN][1000 genomes]
rs74014208	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74014212	0.85[ASN][1000 genomes]
rs74016655	0.84[ASN][1000 genomes]
rs74016656	0.85[ASN][1000 genomes]
rs8026071	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs8030914	0.80[EUR][1000 genomes]
rs8040699	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7176139	LPAR6	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
2	chr15:54825600-54828400	Strong transcription	Fetal Lung	lung

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