Variant report

Variant	rs62022208
Chromosome Location	chr15:54846528-54846529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10518772	0.83[ASN][1000 genomes]
rs16974787	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16974800	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17237683	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17818572	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1818706	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28412587	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28570166	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28611313	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28869904	0.86[EUR][1000 genomes]
rs4444284	0.82[ASN][1000 genomes]
rs62022200	0.81[EUR][1000 genomes]
rs62022201	0.81[EUR][1000 genomes]
rs62022202	0.81[EUR][1000 genomes]
rs62022203	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022204	0.81[EUR][1000 genomes]
rs62022205	0.81[EUR][1000 genomes]
rs62022206	0.81[EUR][1000 genomes]
rs62022207	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022209	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022210	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022212	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022213	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022409	0.81[EUR][1000 genomes]
rs62022411	0.81[EUR][1000 genomes]
rs62022412	0.81[EUR][1000 genomes]
rs62022413	0.81[EUR][1000 genomes]
rs62022414	0.81[EUR][1000 genomes]
rs62022419	0.81[EUR][1000 genomes]
rs62022747	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62022749	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022750	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62022751	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022752	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022753	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022754	0.83[AMR][1000 genomes]
rs62022755	0.83[AMR][1000 genomes]
rs62022756	0.83[AMR][1000 genomes]
rs62022757	0.83[AMR][1000 genomes]
rs62022758	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022759	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62023984	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62023985	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62023986	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62023987	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62023988	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62023989	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62023990	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62023992	0.85[EUR][1000 genomes]
rs62023993	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7168929	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7176139	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7177288	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74014208	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74014216	0.85[ASN][1000 genomes]
rs8040295	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8040699	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8040891	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8041462	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3344298	chr15:54843610-54846683	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3326604	chr15:54844185-54847033	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
2	chr15:54839800-54858800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links