Variant report

Variant	rs17237683
Chromosome Location	chr15:54856034-54856035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs11630118	1.00[AFR][1000 genomes]
rs11633379	1.00[AFR][1000 genomes]
rs11633594	1.00[AFR][1000 genomes]
rs11635719	1.00[AFR][1000 genomes]
rs11638551	1.00[AFR][1000 genomes]
rs16974787	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16974800	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17237718	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17237725	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17818572	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1818706	1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2018231	1.00[AFR][1000 genomes]
rs28368978	1.00[AFR][1000 genomes]
rs28459534	1.00[AFR][1000 genomes]
rs28570166	0.81[EUR][1000 genomes]
rs28700587	1.00[AFR][1000 genomes]
rs57273810	0.83[EUR][1000 genomes]
rs58025043	0.87[EUR][1000 genomes]
rs58513964	0.83[EUR][1000 genomes]
rs58750441	0.90[EUR][1000 genomes]
rs59729248	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60912017	0.83[EUR][1000 genomes]
rs62022200	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022201	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022202	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022203	0.81[EUR][1000 genomes]
rs62022204	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022205	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022206	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022208	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022398	0.94[EUR][1000 genomes]
rs62022400	0.89[EUR][1000 genomes]
rs62022401	0.89[EUR][1000 genomes]
rs62022402	0.83[EUR][1000 genomes]
rs62022404	0.89[EUR][1000 genomes]
rs62022405	0.89[EUR][1000 genomes]
rs62022406	0.89[EUR][1000 genomes]
rs62022409	0.96[EUR][1000 genomes]
rs62022410	0.90[EUR][1000 genomes]
rs62022411	0.96[EUR][1000 genomes]
rs62022412	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022413	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022414	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022416	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022417	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022419	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022420	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022423	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022424	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022425	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022427	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022747	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022750	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022754	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022755	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022756	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62022757	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022759	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023985	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023986	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023987	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023988	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023989	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023990	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023992	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023993	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023994	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023995	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023996	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023997	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62023999	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7168929	0.81[EUR][1000 genomes]
rs73421550	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73421556	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73421557	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74014208	0.81[EUR][1000 genomes]
rs8024541	0.83[EUR][1000 genomes]
rs8030914	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8040295	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040699	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041462	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
2	chr15:54839800-54858800	Weak transcription	Fetal Lung	lung
3	chr15:54855600-54857400	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:54856000-54856400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:54856000-54856800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr15:54856000-54857200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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