Variant report

Variant	rs11635719
Chromosome Location	chr15:54975543-54975544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11630118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11633379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11633594	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11638551	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11638710	1.00[AFR][1000 genomes]
rs17237683	1.00[AFR][1000 genomes]
rs17237718	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs17237725	1.00[CEU][hapmap]
rs2018231	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2460607	0.84[EUR][1000 genomes]
rs28368978	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28445947	0.80[EUR][1000 genomes]
rs28459534	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28497275	0.81[EUR][1000 genomes]
rs28548973	0.80[EUR][1000 genomes]
rs28700587	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2947002	0.84[EUR][1000 genomes]
rs34520840	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57406873	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62022201	1.00[AFR][1000 genomes]
rs62022202	1.00[AFR][1000 genomes]
rs62022204	1.00[AFR][1000 genomes]
rs62022205	1.00[AFR][1000 genomes]
rs62023989	1.00[AFR][1000 genomes]
rs62023993	1.00[AFR][1000 genomes]
rs62023994	1.00[AFR][1000 genomes]
rs62023995	1.00[AFR][1000 genomes]
rs62023996	1.00[AFR][1000 genomes]
rs7169130	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7178021	0.88[AMR][1000 genomes]
rs7183323	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74014271	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8029339	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1043600	chr15:54910593-55010156	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
4	nsv1043237	chr15:54916301-55034633	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv904238	chr15:54919539-54998764	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
6	nsv1053983	chr15:54920850-54999183	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv833013	chr15:54927825-55135274	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv457155	chr15:54943193-55078723	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv569519	chr15:54943193-55078723	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1035785	chr15:54951691-55266222	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv542390	chr15:54951691-55266222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv984192	chr15:54960002-54981498	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54972400-54975600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:54974400-54975800	Enhancers	Primary hematopoietic stem cells	blood
3	chr15:54975000-54975600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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