Variant report

Variant	rs28497275
Chromosome Location	chr15:54878537-54878538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11630118	0.81[EUR][1000 genomes]
rs11633379	0.81[EUR][1000 genomes]
rs11633594	0.88[EUR][1000 genomes]
rs11635719	0.81[EUR][1000 genomes]
rs11638551	0.88[EUR][1000 genomes]
rs17237718	0.82[ASN][1000 genomes]
rs17237725	0.82[ASN][1000 genomes]
rs2018231	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2460607	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28368978	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28445947	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28459534	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28548973	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28700587	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2947002	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57406873	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62023987	0.82[ASN][1000 genomes]
rs62023988	0.82[ASN][1000 genomes]
rs62023989	0.82[ASN][1000 genomes]
rs62023990	0.82[ASN][1000 genomes]
rs62023992	0.82[ASN][1000 genomes]
rs62023993	0.82[ASN][1000 genomes]
rs62023994	0.82[ASN][1000 genomes]
rs62023995	0.82[ASN][1000 genomes]
rs62023996	0.82[ASN][1000 genomes]
rs62023997	0.82[ASN][1000 genomes]
rs62023999	0.82[ASN][1000 genomes]
rs7169130	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7183323	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74014271	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8029339	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039548	chr15:54856965-54914519	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv569508	chr15:54876212-54904782	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv526413	chr15:54876423-54904782	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54870000-54879800	Weak transcription	Aorta	Aorta
2	chr15:54871200-54882400	Weak transcription	Fetal Lung	lung
3	chr15:54873800-54880800	Strong transcription	Fetal Heart	heart

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