Variant report

Variant	rs62023999
Chromosome Location	chr15:54872847-54872848
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:54867084..54868948-chr15:54872476..54874542,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs16974787	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16974800	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17237683	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17237718	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17237725	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17818572	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1818706	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28497275	0.82[ASN][1000 genomes]
rs62022207	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022209	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022210	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022212	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022213	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022747	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022749	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022750	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022751	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022752	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022753	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022754	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022755	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022756	0.84[AMR][1000 genomes]
rs62022757	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022758	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62022759	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62023984	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62023985	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62023986	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62023987	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62023988	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62023989	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62023990	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62023992	1.00[ASN][1000 genomes]
rs62023993	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62023994	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023995	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023996	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62023997	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040295	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8040699	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8040891	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8041462	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039548	chr15:54856965-54914519	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54870000-54879800	Weak transcription	Aorta	Aorta
2	chr15:54871200-54882400	Weak transcription	Fetal Lung	lung
3	chr15:54871400-54873400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr15:54872200-54873800	Weak transcription	Fetal Heart	heart
5	chr15:54872600-54873000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:54872800-54873400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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