Variant report

Variant	rs60175335
Chromosome Location	chr10:94315924-94315925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10882080	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11186998	0.80[AMR][1000 genomes]
rs11187045	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11187062	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11187068	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11819413	0.90[AMR][1000 genomes]
rs12249976	0.90[AMR][1000 genomes]
rs12252447	0.83[AMR][1000 genomes]
rs12255048	0.83[AMR][1000 genomes]
rs56085207	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56191416	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58681266	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59452338	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7086558	0.90[AMR][1000 genomes]
rs7900822	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7909487	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94267800-94328800	Weak transcription	Fetal Heart	heart
2	chr10:94272000-94317200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:94272200-94332000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:94272200-94332200	Weak transcription	Gastric	stomach
5	chr10:94277200-94331200	Weak transcription	Stomach Mucosa	stomach
6	chr10:94277800-94332200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:94290400-94318800	Weak transcription	Right Ventricle	heart
8	chr10:94295400-94318000	Weak transcription	NH-A	brain
9	chr10:94295600-94318600	Weak transcription	Fetal Kidney	kidney
10	chr10:94298600-94318600	Weak transcription	Hela-S3	cervix
11	chr10:94304600-94318800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:94304600-94318800	Weak transcription	K562	blood
13	chr10:94304600-94331400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:94305400-94318800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:94305400-94323600	Weak transcription	HMEC	breast
16	chr10:94310200-94325000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:94312000-94316600	Weak transcription	HepG2	liver
18	chr10:94313800-94316200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:94313800-94327000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:94314200-94316200	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:94314200-94317200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:94314200-94317600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:94314200-94318800	Weak transcription	HSMMtube	muscle
24	chr10:94314200-94319000	Weak transcription	NHEK	skin
25	chr10:94314200-94320200	Weak transcription	Esophagus	oesophagus
26	chr10:94314200-94320800	Strong transcription	Dnd41	blood
27	chr10:94314200-94325800	Weak transcription	Pancreas	Pancrea
28	chr10:94314200-94326800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:94314200-94327200	Weak transcription	Brain Anterior Caudate	brain
30	chr10:94314200-94328800	Weak transcription	NHLF	lung
31	chr10:94314200-94331000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:94314200-94331200	Weak transcription	Brain Substantia Nigra	brain
33	chr10:94314200-94331200	Weak transcription	Small Intestine	intestine
34	chr10:94314200-94331400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr10:94314200-94331400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:94314200-94331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:94314200-94332000	Weak transcription	Colonic Mucosa	Colon
38	chr10:94314400-94316200	Strong transcription	Primary T cells from cord blood	blood
39	chr10:94314400-94316600	Weak transcription	HUVEC	blood vessel
40	chr10:94314400-94317000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:94314400-94317200	Strong transcription	Placenta	Placenta
42	chr10:94314400-94317600	Strong transcription	Fetal Thymus	thymus
43	chr10:94314400-94318400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:94314400-94318400	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:94314400-94318800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr10:94314400-94318800	Weak transcription	Brain Germinal Matrix	brain
47	chr10:94314400-94318800	Weak transcription	Fetal Brain Male	brain
48	chr10:94314400-94318800	Weak transcription	Fetal Intestine Large	intestine
49	chr10:94314400-94320000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:94314400-94320000	Weak transcription	Thymus	Thymus

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