Variant report

Variant	rs7909487
Chromosome Location	chr10:94332716-94332717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94301008..94306280-chr10:94330329..94333980,6	MCF-7	breast:
2	chr10:94327650..94337583-chr10:94349444..94356782,22	K562	blood:
3	chr10:94300885..94308768-chr10:94330971..94336052,7	K562	blood:
4	chr10:94330286..94336827-chr10:94349891..94354260,15	K562	blood:
5	chr10:94332371..94335153-chr10:94446165..94448467,2	K562	blood:
6	chr10:94332262..94336114-chr10:94349834..94354042,11	MCF-7	breast:
7	chr10:94302530..94304452-chr10:94331957..94333694,2	MCF-7	breast:
8	chr10:94332407..94336018-chr10:94349212..94353201,7	MCF-7	breast:
9	chr10:94331646..94333667-chr10:94512127..94514610,2	K562	blood:
10	chr10:94331851..94333492-chr10:94336755..94339321,2	K562	blood:
11	chr10:94331601..94334574-chr10:94607928..94609540,2	MCF-7	breast:
12	chr10:94332595..94333263-chr17:56756598..56757335,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction
ENSG00000200997	Chromatin interaction
ENSG00000138160	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11187042	1.00[EUR][1000 genomes]
rs11187062	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs12252447	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255048	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258487	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs34417963	1.00[EUR][1000 genomes]
rs56085207	0.83[AMR][1000 genomes]
rs58681266	0.83[AMR][1000 genomes]
rs60175335	0.83[AMR][1000 genomes]
rs61401447	1.00[EUR][1000 genomes]
rs7900822	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94331200-94332800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:94331200-94332800	Flanking Active TSS	Hela-S3	cervix
3	chr10:94331200-94332800	Flanking Active TSS	Osteobl	bone
4	chr10:94331400-94333000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:94331400-94333200	Flanking Active TSS	HUVEC	blood vessel
6	chr10:94331400-94334600	Active TSS	A549	lung
7	chr10:94331600-94332800	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:94331600-94332800	Flanking Active TSS	NHEK	skin
9	chr10:94331800-94332800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr10:94331800-94333000	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr10:94331800-94333000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr10:94331800-94333200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
13	chr10:94331800-94333200	Flanking Active TSS	Dnd41	blood
14	chr10:94332000-94332800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:94332000-94332800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:94332000-94332800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr10:94332000-94332800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:94332000-94332800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr10:94332000-94332800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:94332000-94332800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:94332000-94332800	Flanking Active TSS	Right Atrium	heart
22	chr10:94332000-94332800	Flanking Active TSS	Right Ventricle	heart
23	chr10:94332000-94333000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:94332000-94333000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr10:94332000-94333000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:94332000-94333000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr10:94332000-94333000	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr10:94332000-94333200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr10:94332000-94333200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr10:94332000-94333200	Flanking Active TSS	NH-A	brain
31	chr10:94332000-94333400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr10:94332000-94333400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:94332000-94333400	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr10:94332000-94334800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:94332200-94332800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
36	chr10:94332200-94332800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
37	chr10:94332200-94332800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr10:94332200-94332800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:94332200-94332800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr10:94332200-94332800	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr10:94332200-94332800	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr10:94332200-94332800	Enhancers	Placenta Amnion	Placenta Amnion
43	chr10:94332200-94332800	Flanking Active TSS	Psoas Muscle	Psoas
44	chr10:94332200-94332800	Flanking Active TSS	Thymus	Thymus
45	chr10:94332200-94332800	Flanking Active TSS	GM12878-XiMat	blood
46	chr10:94332200-94333000	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr10:94332200-94333000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr10:94332200-94333000	Flanking Active TSS	Liver	Liver
49	chr10:94332200-94333000	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr10:94332200-94333000	Flanking Active TSS	Duodenum Mucosa	Duodenum

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