Variant report

Variant	rs60180955
Chromosome Location	chr1:222121517-222121518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11577080	1.00[ASN][1000 genomes]
rs11579174	1.00[ASN][1000 genomes]
rs11588928	0.89[ASN][1000 genomes]
rs11589814	0.96[ASN][1000 genomes]
rs11589963	1.00[ASN][1000 genomes]
rs11589997	1.00[ASN][1000 genomes]
rs11590034	1.00[ASN][1000 genomes]
rs11590843	0.89[ASN][1000 genomes]
rs17011133	0.91[ASN][1000 genomes]
rs17011142	0.96[ASN][1000 genomes]
rs17011162	0.96[ASN][1000 genomes]
rs56779601	0.96[ASN][1000 genomes]
rs56905116	0.91[ASN][1000 genomes]
rs57015712	0.91[ASN][1000 genomes]
rs58183247	0.96[ASN][1000 genomes]
rs58687635	0.91[ASN][1000 genomes]
rs58766825	0.93[ASN][1000 genomes]
rs59610764	0.96[ASN][1000 genomes]
rs60321950	0.91[ASN][1000 genomes]
rs60602367	0.96[ASN][1000 genomes]
rs60617250	0.91[ASN][1000 genomes]
rs60839601	0.96[ASN][1000 genomes]
rs60965848	0.91[ASN][1000 genomes]
rs74145036	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945304	chr1:222114347-222131255	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222115400-222131600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:222118800-222123000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:222121000-222121800	Enhancers	NHEK	skin
4	chr1:222121000-222122800	Enhancers	HMEC	breast
5	chr1:222121200-222121600	Enhancers	Dnd41	blood
6	chr1:222121200-222122000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:222121200-222122200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:222121200-222122200	Enhancers	HSMM	muscle
9	chr1:222121200-222123400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:222121400-222121800	Flanking Active TSS	Hela-S3	cervix
11	chr1:222121400-222122000	Enhancers	Esophagus	oesophagus
12	chr1:222121400-222122200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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