Variant report

Variant	rs602031
Chromosome Location	chr19:39500434-39500435
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1268244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1268246	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1268253	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs484348	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs494515	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs500268	0.90[AMR][1000 genomes]
rs520340	0.80[AMR][1000 genomes]
rs565581	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs579569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs632308	0.80[AMR][1000 genomes]
rs636534	0.90[AMR][1000 genomes]
rs674440	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:39494600-39503400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr19:39496600-39504400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr19:39496600-39515800	Weak transcription	Ovary	ovary
7	chr19:39498400-39516600	Weak transcription	A549	lung
8	chr19:39499400-39516600	Weak transcription	Brain Anterior Caudate	brain
9	chr19:39499800-39516800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr19:39500000-39515600	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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