Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:159791381..159792349-chr1:159861025..159861599,2	MCF-7	breast:
2	chr1:159785033..159789161-chr1:159789776..159794459,5	K562	blood:
3	chr1:159775540..159777922-chr1:159789657..159792630,2	K562	blood:
4	chr1:159749994..159750760-chr1:159791132..159791985,3	K562	blood:
5	chr1:159791220..159791939-chr1:159915143..159916042,2	K562	blood:
6	chr1:159789616..159791750-chr1:159794351..159797260,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11585836	0.85[AMR][1000 genomes]
rs11590961	0.85[AMR][1000 genomes]
rs11591079	0.81[EUR][1000 genomes]
rs12061921	0.82[ASN][1000 genomes]
rs12088352	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4443889	0.83[AMR][1000 genomes]
rs4656246	0.84[EUR][1000 genomes]
rs4656851	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55650803	0.85[AMR][1000 genomes]
rs55739401	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55742616	0.81[EUR][1000 genomes]
rs57198275	0.84[AMR][1000 genomes]
rs58240276	0.84[AMR][1000 genomes]
rs61821659	0.84[EUR][1000 genomes]
rs61823160	0.84[EUR][1000 genomes]
rs61823162	0.84[EUR][1000 genomes]
rs61823163	0.84[EUR][1000 genomes]
rs61823164	0.85[EUR][1000 genomes]
rs61823165	0.83[EUR][1000 genomes]
rs6427496	0.87[EUR][1000 genomes]
rs6656979	0.85[AMR][1000 genomes]
rs6657365	0.85[AMR][1000 genomes]
rs6672434	0.85[AMR][1000 genomes]
rs72700621	0.84[EUR][1000 genomes]
rs72700626	0.84[EUR][1000 genomes]
rs72700627	0.86[EUR][1000 genomes]
rs72700628	0.84[EUR][1000 genomes]
rs72700632	0.86[EUR][1000 genomes]
rs72700634	0.86[EUR][1000 genomes]
rs7525794	0.84[EUR][1000 genomes]
rs7527418	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159774800-159796000	Weak transcription	Right Atrium	heart
2	chr1:159775800-159793400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:159779600-159794800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:159785400-159792800	Weak transcription	Spleen	Spleen
5	chr1:159788600-159793000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:159789800-159793000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:159791000-159795800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:159791000-159796600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:159791200-159791800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:159791200-159793200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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