Variant report

Variant	rs4656851
Chromosome Location	chr1:159790333-159790334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159785033..159789161-chr1:159789776..159794459,5	K562	blood:
2	chr1:159789686..159791388-chr1:159893723..159895408,2	K562	blood:
3	chr1:159775540..159777922-chr1:159789657..159792630,2	K562	blood:
4	chr1:159789616..159791750-chr1:159794351..159797260,2	K562	blood:

Variant related genes	Relation type
ENSG00000158714	Chromatin interaction
ENSG00000158710	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11265280	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11265282	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11585836	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11590202	0.92[ASN][1000 genomes]
rs11590961	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12083595	0.88[ASN][1000 genomes]
rs12083967	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12088352	0.82[AMR][1000 genomes]
rs12090961	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2494495	0.88[EUR][1000 genomes]
rs2494519	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2501343	0.84[EUR][1000 genomes]
rs4301626	0.88[ASN][1000 genomes]
rs4443889	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55650803	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55739401	0.81[EUR][1000 genomes]
rs57198275	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58024147	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58240276	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59414252	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60205880	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6656168	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6656979	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6657365	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6659704	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6672434	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6692290	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7512164	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7527418	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159774800-159796000	Weak transcription	Right Atrium	heart
2	chr1:159775800-159793400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:159779600-159794800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:159785400-159792800	Weak transcription	Spleen	Spleen
5	chr1:159785800-159791000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:159787400-159791000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr1:159788600-159793000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:159789800-159793000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links