Variant report

Variant	rs12083967
Chromosome Location	chr1:159778983-159778984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11265280	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11265282	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11585836	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11590961	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12090961	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4443889	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4656851	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55650803	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57198275	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58024147	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58240276	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59414252	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6656168	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6656979	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6657365	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6659704	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6672434	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6692290	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7512164	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159774600-159779000	Weak transcription	Spleen	Spleen
2	chr1:159774800-159796000	Weak transcription	Right Atrium	heart
3	chr1:159775400-159779400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:159775800-159793400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:159776800-159784200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr1:159778800-159779000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr1:159778800-159779600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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