Variant report
| Variant | rs59414252 |
|---|---|
| Chromosome Location | chr1:159766231-159766232 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:159764849..159767103-chr1:159869653..159871560,2 | K562 | blood: | |
| 2 | chr1:159756652..159760361-chr1:159765566..159768582,3 | K562 | blood: | |
| 3 | chr1:159765477..159767886-chr1:159894615..159896169,2 | MCF-7 | breast: | |
| 4 | chr1:159760951..159764398-chr1:159766034..159769710,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000158710 | Chromatin interaction |
| ENSG00000266458 | Chromatin interaction |
| ENSG00000213085 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11265280 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11265282 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11585836 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11590961 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12083967 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12090961 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4443889 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4656851 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs55650803 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs57198275 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs58024147 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs58240276 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6656168 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6656979 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6657365 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6659704 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6672434 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6692290 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7512164 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005195 | chr1:159452759-159910337 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| 2 | nsv521503 | chr1:159762120-159795478 | Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:159765600-159770000 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
