Variant report

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr5:154407635-154408034	ECC-1	luminal epithelium:	n/a	n/a
2	CTCF	chr5:154407490-154407983	T-47D	breast:	n/a	n/a
3	CTCF	chr5:154407627-154407972	K562	blood:	n/a	n/a
4	CTCF	chr5:154407501-154408104	A549	lung:	n/a	n/a
5	CTCF	chr5:154407585-154407959	A549	lung:	n/a	n/a
6	CTCF	chr5:154407600-154407971	GM12878	blood:	n/a	n/a
7	RAD21	chr5:154407523-154408027	A549	lung:	n/a	n/a
8	RAD21	chr5:154407525-154407950	HepG2	liver:	n/a	n/a
9	RAD21	chr5:154407406-154408055	HCT-116	colon:	n/a	n/a
10	RAD21	chr5:154407580-154408084	HCT-116	colon:	n/a	n/a
11	RAD21	chr5:154407520-154407980	H1-hESC	embryonic stem cell:	n/a	n/a
12	RAD21	chr5:154407532-154408065	MCF-7	breast:	n/a	n/a
13	ARID3A	chr5:154407625-154407940	HepG2	liver:	n/a	n/a
14	RAD21	chr5:154407515-154408028	HepG2	liver:	n/a	n/a
15	CTCF	chr5:154407584-154408008	MCF-7	breast:	n/a	n/a
16	RAD21	chr5:154407582-154407953	H1-hESC	embryonic stem cell:	n/a	n/a
17	RAD21	chr5:154407583-154407950	Hela-S3	cervix:	n/a	n/a
18	RAD21	chr5:154407553-154407973	H1-hESC	embryonic stem cell:	n/a	n/a
19	RAD21	chr5:154407558-154407987	HepG2	liver:	n/a	n/a
20	CTCF	chr5:154407454-154408056	MCF-7	breast:	n/a	n/a
21	CTCF	chr5:154407489-154408074	HCT-116	colon:	n/a	n/a
22	RAD21	chr5:154407515-154407945	A549	lung:	n/a	n/a
23	SETDB1	chr5:154407893-154408688	U2OS	brain:	n/a	n/a
24	SMC3	chr5:154407561-154407950	HepG2	liver:	n/a	n/a
25	RAD21	chr5:154407411-154408021	MCF-7	breast:	n/a	n/a
26	RAD21	chr5:154407569-154407950	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:154350796..154352485-chr5:154407366..154409300,2	MCF-7	breast:
2	chr5:154346758..154347900-chr5:154407299..154408191,5	MCF-7	breast:
3	chr5:154351810..154352823-chr5:154407320..154408737,6	MCF-7	breast:
4	chr5:154351777..154353155-chr5:154407250..154408188,7	MCF-7	breast:
5	chr5:154402654..154405325-chr5:154405571..154408812,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000221131	TF binding region
ENSG00000221131	Chromatin interaction

rSNPs within LD-proxies of this variant (count:4)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762561	chr5:154403211-154408886	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3374550	chr5:154403808-154421409	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3410951	chr5:154403808-154427370	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154404000-154413400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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