Variant report

Variant	rs6580128
Chromosome Location	chr5:154402999-154403000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60211387	1.00[AMR][1000 genomes]
rs6883972	1.00[AMR][1000 genomes]
rs73282576	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7702878	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154393600-154403000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:154399600-154403600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:154399600-154403600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:154399800-154403000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:154402800-154403000	Enhancers	HepG2	liver
6	chr5:154402800-154404000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr5:154402800-154404600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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