Variant report

Variant	rs60219110
Chromosome Location	chr8:96286270-96286271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61601218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266468	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266470	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266472	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023866	chr8:96273255-96306378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96284600-96286800	Enhancers	Placenta	Placenta
2	chr8:96285400-96287000	Enhancers	Fetal Muscle Leg	muscle
3	chr8:96285600-96286400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr8:96285600-96286400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr8:96285600-96286600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:96285600-96286800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:96285800-96286400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:96286000-96286400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:96286000-96286400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:96286000-96286600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:96286000-96287000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:96286000-96287200	Enhancers	Fetal Heart	heart
13	chr8:96286200-96287000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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