The 2.0 version of rSNPBase

Variant report

Variant rs60220209
Chromosome Location chr6:34570356-34570357
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:34554000-34573600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr6:34554600-34577200 Weak transcription HUVEC blood vessel
3 chr6:34555400-34574200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr6:34556200-34612200 Weak transcription Placenta Amnion Placenta Amnion
5 chr6:34557200-34573600 Weak transcription Colonic Mucosa Colon
6 chr6:34557400-34612400 Weak transcription Fetal Kidney kidney
7 chr6:34557600-34573200 Weak transcription Spleen Spleen
8 chr6:34557600-34573400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr6:34558000-34573400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr6:34558000-34573400 Weak transcription Placenta Placenta
11 chr6:34558200-34571600 Weak transcription Primary neutrophils fromperipheralblood blood
12 chr6:34558400-34577200 Weak transcription Hela-S3 cervix
13 chr6:34558600-34570400 Weak transcription Fetal Muscle Leg muscle
14 chr6:34560200-34573400 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr6:34560400-34578600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr6:34560600-34570400 Weak transcription Fetal Muscle Trunk muscle
17 chr6:34560800-34572200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr6:34561600-34575400 Strong transcription Primary T cells from cord blood blood
19 chr6:34562600-34570600 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr6:34562600-34585200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr6:34563800-34579000 Weak transcription HMEC breast
22 chr6:34564000-34578000 Weak transcription NHDF-Ad bronchial
23 chr6:34564800-34571000 Enhancers Brain Inferior Temporal Lobe brain
24 chr6:34565000-34571000 Enhancers Adipose Nuclei Adipose
25 chr6:34565000-34571800 Enhancers Skeletal Muscle Female skeletal muscle
26 chr6:34565200-34570800 Enhancers Brain Angular Gyrus brain
27 chr6:34565200-34570800 Enhancers Ovary ovary
28 chr6:34565200-34572400 Enhancers Skeletal Muscle Male skeletal muscle
29 chr6:34565600-34574200 Weak transcription Esophagus oesophagus
30 chr6:34565600-34576000 Strong transcription Monocytes-CD14+_RO01746 blood
31 chr6:34565800-34571000 Enhancers Fetal Heart heart
32 chr6:34566000-34573600 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr6:34566200-34570400 Weak transcription NHEK skin
34 chr6:34566200-34570600 Enhancers Brain Hippocampus Middle brain
35 chr6:34566400-34574200 Strong transcription GM12878-XiMat blood
36 chr6:34566600-34570800 Enhancers Brain Substantia Nigra brain
37 chr6:34566600-34571000 Strong transcription Primary hematopoietic stem cells blood
38 chr6:34566600-34571000 Enhancers Psoas Muscle Psoas
39 chr6:34566600-34571400 Enhancers Pancreas Pancrea
40 chr6:34566600-34574000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
41 chr6:34566600-34575800 Strong transcription Primary T regulatory cells fromperipheralblood blood
42 chr6:34566800-34574000 Weak transcription Small Intestine intestine
43 chr6:34566800-34574800 Strong transcription Primary hematopoietic stem cells short term culture blood
44 chr6:34567000-34570600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr6:34567000-34575800 Strong transcription Primary B cells from peripheral blood blood
46 chr6:34567000-34575800 Strong transcription Primary T cells fromperipheralblood blood
47 chr6:34567000-34612200 Weak transcription Fetal Lung lung
48 chr6:34567200-34570600 Weak transcription Aorta Aorta
49 chr6:34567200-34571200 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr6:34567400-34570600 Strong transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015