Variant report

Variant	rs60221524
Chromosome Location	chr16:81592031-81592032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81589280..81593699-chr16:81599147..81604604,6	MCF-7	breast:
2	chr16:81591701..81593949-chr16:81629587..81632188,2	MCF-7	breast:
3	chr16:81557086..81559213-chr16:81591248..81592791,2	MCF-7	breast:
4	chr16:81586015..81589398-chr16:81589613..81592514,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72829028	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	esv2754804	chr16:81579729-81606569	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1898	chr16:81581637-81626505	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv573361	chr16:81591496-81610722	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81570800-81594200	Weak transcription	Hela-S3	cervix
2	chr16:81573600-81594800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:81577600-81593200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr16:81580200-81597600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr16:81581600-81608400	Weak transcription	Primary B cells from cord blood	blood
6	chr16:81585000-81592200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr16:81585200-81602000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr16:81585600-81628600	Weak transcription	GM12878-XiMat	blood
9	chr16:81586000-81601400	Weak transcription	Fetal Thymus	thymus
10	chr16:81586400-81592400	Genic enhancers	Fetal Intestine Small	intestine
11	chr16:81586800-81592200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr16:81587000-81596600	Weak transcription	Brain Angular Gyrus	brain
13	chr16:81587000-81603800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr16:81587400-81594200	Weak transcription	Osteobl	bone
15	chr16:81587400-81597200	Weak transcription	Fetal Brain Female	brain
16	chr16:81587600-81592200	Weak transcription	Brain Anterior Caudate	brain
17	chr16:81587600-81592400	Weak transcription	Fetal Brain Male	brain
18	chr16:81587600-81592800	Weak transcription	Brain Substantia Nigra	brain
19	chr16:81587600-81594200	Weak transcription	NH-A	brain
20	chr16:81587600-81594600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr16:81587800-81592200	Weak transcription	Brain Germinal Matrix	brain
22	chr16:81588000-81592600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr16:81588000-81592600	Weak transcription	HMEC	breast
24	chr16:81588000-81601600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr16:81588200-81596600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr16:81588200-81600600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr16:81588200-81640800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr16:81588400-81594200	Weak transcription	HUVEC	blood vessel
29	chr16:81588600-81592200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr16:81589200-81598800	Weak transcription	Thymus	Thymus
31	chr16:81589200-81601800	Weak transcription	Left Ventricle	heart
32	chr16:81589400-81593400	Weak transcription	Placenta	Placenta
33	chr16:81589400-81598800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr16:81589600-81594200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr16:81589800-81592800	Enhancers	Duodenum Mucosa	Duodenum
36	chr16:81589800-81595800	Weak transcription	Fetal Stomach	stomach
37	chr16:81590000-81597600	Genic enhancers	HepG2	liver
38	chr16:81590200-81592200	Strong transcription	Primary T cells from cord blood	blood
39	chr16:81590400-81594200	Weak transcription	Dnd41	blood
40	chr16:81590600-81592200	Weak transcription	Liver	Liver
41	chr16:81590600-81594200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr16:81590600-81595600	Enhancers	Fetal Intestine Large	intestine
43	chr16:81590600-81602000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr16:81590800-81593600	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr16:81590800-81594200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr16:81590800-81594400	Weak transcription	NHLF	lung
47	chr16:81591000-81594200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr16:81591200-81592200	Enhancers	Small Intestine	intestine
49	chr16:81591400-81592400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr16:81591400-81593400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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