Variant report

Variant	rs72829028
Chromosome Location	chr16:81588557-81588558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81587032..81590904-chr16:81592569..81595083,4	K562	blood:
2	chr16:81587793..81589565-chr16:81593147..81594914,2	K562	blood:
3	chr16:81587351..81589044-chr16:81811838..81813407,2	K562	blood:
4	chr16:81586015..81589398-chr16:81589613..81592514,4	MCF-7	breast:
5	chr16:81575502..81578399-chr16:81587269..81589357,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197943	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60221524	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	esv2754804	chr16:81579729-81606569	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1898	chr16:81581637-81626505	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81556000-81590000	Weak transcription	Dnd41	blood
2	chr16:81570800-81594200	Weak transcription	Hela-S3	cervix
3	chr16:81573600-81594800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr16:81577400-81591600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr16:81577600-81593200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr16:81580200-81597600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr16:81581000-81589200	Enhancers	Adipose Nuclei	Adipose
8	chr16:81581200-81588600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr16:81581600-81608400	Weak transcription	Primary B cells from cord blood	blood
10	chr16:81581800-81589200	Enhancers	Pancreas	Pancrea
11	chr16:81582800-81589400	Enhancers	Fetal Heart	heart
12	chr16:81583000-81591400	Genic enhancers	A549	lung
13	chr16:81583400-81588800	Enhancers	Esophagus	oesophagus
14	chr16:81583400-81589000	Enhancers	NHDF-Ad	bronchial
15	chr16:81583800-81589600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr16:81584800-81589400	Enhancers	Fetal Muscle Leg	muscle
17	chr16:81585000-81592200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr16:81585200-81602000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr16:81585400-81589200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr16:81585600-81591800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr16:81585600-81628600	Weak transcription	GM12878-XiMat	blood
22	chr16:81585800-81588600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr16:81585800-81589200	Enhancers	Fetal Muscle Trunk	muscle
24	chr16:81586000-81591800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr16:81586000-81601400	Weak transcription	Fetal Thymus	thymus
26	chr16:81586200-81591400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr16:81586400-81591600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr16:81586400-81592400	Genic enhancers	Fetal Intestine Small	intestine
29	chr16:81586600-81589000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr16:81586600-81589000	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr16:81586800-81592200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr16:81587000-81590000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr16:81587000-81596600	Weak transcription	Brain Angular Gyrus	brain
34	chr16:81587000-81603800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr16:81587200-81589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr16:81587200-81591600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr16:81587200-81592000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr16:81587400-81588800	Weak transcription	Placenta	Placenta
39	chr16:81587400-81589200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr16:81587400-81589200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr16:81587400-81589200	Enhancers	Stomach Smooth Muscle	stomach
42	chr16:81587400-81590200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr16:81587400-81590200	Weak transcription	Gastric	stomach
44	chr16:81587400-81591800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr16:81587400-81591800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr16:81587400-81594200	Weak transcription	Osteobl	bone
47	chr16:81587400-81597200	Weak transcription	Fetal Brain Female	brain
48	chr16:81587600-81588600	Weak transcription	Left Ventricle	heart
49	chr16:81587600-81588600	Weak transcription	Lung	lung
50	chr16:81587600-81588600	Weak transcription	Right Atrium	heart

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