Variant report

Variant	rs60221635
Chromosome Location	chr15:39718808-39718809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58779496	0.87[AFR][1000 genomes]
rs59340114	0.83[AFR][1000 genomes]
rs60154248	0.91[AFR][1000 genomes]
rs73393453	0.83[AFR][1000 genomes]
rs73393482	0.87[AFR][1000 genomes]
rs73393483	0.80[AFR][1000 genomes]
rs73395350	1.00[AFR][1000 genomes]
rs73397331	0.91[AFR][1000 genomes]
rs73397372	0.91[AFR][1000 genomes]
rs73399383	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1052908	chr15:39692049-39750193	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1044082	chr15:39693241-39750193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1036091	chr15:39699841-39750193	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39712600-39719000	Weak transcription	Right Ventricle	heart
2	chr15:39712600-39724200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:39713000-39721800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:39713200-39727400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:39718600-39719000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:39718600-39719000	Enhancers	Primary hematopoietic stem cells	blood
7	chr15:39718600-39720200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:39718800-39719000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:39718800-39719000	Enhancers	Primary B cells from cord blood	blood
10	chr15:39718800-39719000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr15:39718800-39719000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:39718800-39719000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr15:39718800-39719000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:39718800-39719000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:39718800-39719000	Enhancers	Small Intestine	intestine
16	chr15:39718800-39719000	Enhancers	HSMMtube	muscle
17	chr15:39718800-39719000	Enhancers	NH-A	brain
18	chr15:39718800-39719000	Enhancers	Osteobl	bone
19	chr15:39718800-39719200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:39718800-39719200	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr15:39718800-39719200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr15:39718800-39719200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:39718800-39719200	Enhancers	Fetal Thymus	thymus
24	chr15:39718800-39719200	Enhancers	Thymus	Thymus
25	chr15:39718800-39719200	Enhancers	HSMM	muscle
26	chr15:39718800-39719200	Enhancers	K562	blood
27	chr15:39718800-39719200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr15:39718800-39719200	Enhancers	NHDF-Ad	bronchial
29	chr15:39718800-39719400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:39718800-39719400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:39718800-39719400	Enhancers	Duodenum Mucosa	Duodenum
32	chr15:39718800-39719600	Enhancers	Primary B cells from peripheral blood	blood
33	chr15:39718800-39719600	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr15:39718800-39719600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:39718800-39719600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr15:39718800-39720000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:39718800-39720000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr15:39718800-39720000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:39718800-39720000	Enhancers	Right Atrium	heart
40	chr15:39718800-39720000	Flanking Active TSS	GM12878-XiMat	blood
41	chr15:39718800-39720200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:39718800-39720200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr15:39718800-39720200	Enhancers	Lung	lung
44	chr15:39718800-39720200	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr15:39718800-39720400	Enhancers	Dnd41	blood
46	chr15:39718800-39720600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:39718800-39720600	Enhancers	Primary T helper cells PMA-I stimulated	--

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