Variant report

Variant	rs73393483
Chromosome Location	chr15:39712569-39712570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59340114	0.88[AFR][1000 genomes]
rs60221635	0.80[AFR][1000 genomes]
rs73393453	0.88[AFR][1000 genomes]
rs73393482	0.92[AFR][1000 genomes]
rs73395350	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1052908	chr15:39692049-39750193	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1044082	chr15:39693241-39750193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1036091	chr15:39699841-39750193	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39704200-39718800	Weak transcription	Thymus	Thymus
2	chr15:39710600-39712600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:39711400-39712800	Enhancers	HepG2	liver
4	chr15:39711600-39712600	Enhancers	Fetal Heart	heart
5	chr15:39711800-39712600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:39711800-39712600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:39712000-39712600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:39712000-39712600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:39712000-39712600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:39712000-39712600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:39712000-39712600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:39712000-39712600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:39712000-39712600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:39712000-39712600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:39712000-39712600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:39712000-39712600	Enhancers	Placenta	Placenta
17	chr15:39712000-39712600	Flanking Active TSS	K562	blood
18	chr15:39712000-39712800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:39712000-39712800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:39712000-39712800	Enhancers	Esophagus	oesophagus
21	chr15:39712000-39712800	Flanking Active TSS	NHEK	skin
22	chr15:39712000-39713000	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr15:39712000-39713200	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr15:39712200-39712600	Enhancers	NHDF-Ad	bronchial
25	chr15:39712200-39712800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr15:39712200-39713000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr15:39712400-39712600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
28	chr15:39712400-39712600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:39712400-39712600	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr15:39712400-39712600	Enhancers	Right Ventricle	heart
31	chr15:39712400-39712800	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr15:39712400-39712800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:39712400-39712800	Flanking Active TSS	Fetal Thymus	thymus
34	chr15:39712400-39713000	Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr15:39712400-39713000	Enhancers	Primary T cells from cord blood	blood
36	chr15:39712400-39713000	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr15:39712400-39713200	Active TSS	ES-I3 Cell Line	embryonic stem cell

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