Variant report

Variant	rs60223559
Chromosome Location	chr8:39922635-39922636
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10282846	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10504015	0.92[EUR][1000 genomes]
rs10504016	0.92[EUR][1000 genomes]
rs10504017	0.92[EUR][1000 genomes]
rs12114041	0.97[EUR][1000 genomes]
rs16888751	0.92[EUR][1000 genomes]
rs16888756	0.92[EUR][1000 genomes]
rs16888759	0.92[EUR][1000 genomes]
rs16888767	0.97[EUR][1000 genomes]
rs16888769	0.92[EUR][1000 genomes]
rs16888772	0.92[EUR][1000 genomes]
rs16888778	0.92[EUR][1000 genomes]
rs16888781	0.92[EUR][1000 genomes]
rs16888784	0.92[EUR][1000 genomes]
rs16888789	0.92[EUR][1000 genomes]
rs16888796	0.92[EUR][1000 genomes]
rs16888801	0.92[EUR][1000 genomes]
rs16888804	0.92[EUR][1000 genomes]
rs16888805	0.92[EUR][1000 genomes]
rs16888807	0.92[EUR][1000 genomes]
rs16888813	0.92[EUR][1000 genomes]
rs2013398	0.92[EUR][1000 genomes]
rs28567739	0.94[EUR][1000 genomes]
rs3899741	0.92[EUR][1000 genomes]
rs55644348	0.87[EUR][1000 genomes]
rs55666363	0.92[EUR][1000 genomes]
rs55704370	0.92[EUR][1000 genomes]
rs55809387	0.92[EUR][1000 genomes]
rs55952840	0.92[EUR][1000 genomes]
rs56114060	0.92[EUR][1000 genomes]
rs56132784	0.92[EUR][1000 genomes]
rs56180191	0.92[EUR][1000 genomes]
rs56185250	0.97[EUR][1000 genomes]
rs57027362	0.92[EUR][1000 genomes]
rs57281613	0.92[EUR][1000 genomes]
rs57326886	0.92[EUR][1000 genomes]
rs57611903	0.86[EUR][1000 genomes]
rs57653585	0.92[EUR][1000 genomes]
rs59995728	0.89[EUR][1000 genomes]
rs60163503	0.87[AMR][1000 genomes]
rs60843978	0.92[EUR][1000 genomes]
rs61566582	0.87[EUR][1000 genomes]
rs6990154	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6990874	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72632070	0.84[EUR][1000 genomes]
rs72632077	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632084	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632085	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632088	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632098	1.00[EUR][1000 genomes]
rs72633009	0.92[EUR][1000 genomes]
rs72633010	0.97[EUR][1000 genomes]
rs72633011	0.92[EUR][1000 genomes]
rs72633012	0.92[EUR][1000 genomes]
rs72633013	0.92[EUR][1000 genomes]
rs72633014	0.92[EUR][1000 genomes]
rs72633015	0.92[EUR][1000 genomes]
rs72633016	0.92[EUR][1000 genomes]
rs72633021	0.92[EUR][1000 genomes]
rs72633023	0.92[EUR][1000 genomes]
rs72633024	0.97[EUR][1000 genomes]
rs72633026	0.97[EUR][1000 genomes]
rs72633034	0.92[EUR][1000 genomes]
rs72633036	0.92[EUR][1000 genomes]
rs72633037	0.97[EUR][1000 genomes]
rs72633038	0.92[EUR][1000 genomes]
rs72633040	0.90[EUR][1000 genomes]
rs72633041	0.92[EUR][1000 genomes]
rs72633043	0.97[EUR][1000 genomes]
rs72633044	0.92[EUR][1000 genomes]
rs72633048	0.97[EUR][1000 genomes]
rs72633054	0.92[EUR][1000 genomes]
rs7813461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822254	0.92[EUR][1000 genomes]
rs7840924	0.92[EUR][1000 genomes]
rs976813	0.92[EUR][1000 genomes]
rs9785157	0.97[EUR][1000 genomes]
rs9785159	0.97[EUR][1000 genomes]
rs9785174	0.92[EUR][1000 genomes]
rs981193	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv967581	chr8:39917856-39928866	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39913000-39939000	Weak transcription	Right Atrium	heart
2	chr8:39920000-39927400	Weak transcription	Fetal Intestine Small	intestine
3	chr8:39920200-39923000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:39920800-39922800	Weak transcription	Stomach Mucosa	stomach

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