Variant report

Variant	rs72632070
Chromosome Location	chr8:39908991-39908992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10282846	0.84[EUR][1000 genomes]
rs12114041	0.81[EUR][1000 genomes]
rs16888767	0.81[EUR][1000 genomes]
rs2909330	1.00[ASN][1000 genomes]
rs2909334	1.00[ASN][1000 genomes]
rs2955884	1.00[ASN][1000 genomes]
rs2955886	1.00[ASN][1000 genomes]
rs2955887	1.00[ASN][1000 genomes]
rs2955889	1.00[ASN][1000 genomes]
rs2981144	1.00[ASN][1000 genomes]
rs2981145	1.00[ASN][1000 genomes]
rs2981146	1.00[ASN][1000 genomes]
rs56185250	0.81[EUR][1000 genomes]
rs60223559	0.84[EUR][1000 genomes]
rs6474201	1.00[ASN][1000 genomes]
rs6990154	0.84[EUR][1000 genomes]
rs6990874	0.84[EUR][1000 genomes]
rs72630581	1.00[ASN][1000 genomes]
rs72632077	0.84[EUR][1000 genomes]
rs72632084	0.84[EUR][1000 genomes]
rs72632085	0.84[EUR][1000 genomes]
rs72632088	0.84[EUR][1000 genomes]
rs72632098	0.84[EUR][1000 genomes]
rs72633010	0.81[EUR][1000 genomes]
rs72633024	0.81[EUR][1000 genomes]
rs72633026	0.81[EUR][1000 genomes]
rs72633037	0.81[EUR][1000 genomes]
rs72633043	0.81[EUR][1000 genomes]
rs72633048	0.81[EUR][1000 genomes]
rs7813461	0.84[EUR][1000 genomes]
rs9785157	0.81[EUR][1000 genomes]
rs9785159	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39899600-39912000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:39906800-39910400	Enhancers	Liver	Liver
3	chr8:39907200-39912000	Weak transcription	Right Atrium	heart
4	chr8:39907600-39910800	Enhancers	Fetal Intestine Large	intestine
5	chr8:39907600-39919000	Enhancers	HepG2	liver
6	chr8:39907800-39909400	Weak transcription	Pancreas	Pancrea
7	chr8:39908000-39911400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr8:39908000-39912400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:39908400-39914000	Enhancers	Fetal Intestine Small	intestine
10	chr8:39908600-39909400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr8:39908800-39909000	Enhancers	A549	lung
12	chr8:39908800-39909200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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