Variant report

Variant	rs60226140
Chromosome Location	chr3:68867304-68867305
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11128090	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12054044	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12629295	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12632377	0.83[AMR][1000 genomes]
rs12633144	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12635072	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12638859	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13062535	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13066315	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13093729	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13095333	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13097433	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17047942	0.82[EUR][1000 genomes]
rs17047968	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17047978	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17047979	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17047991	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1948291	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1994592	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1994593	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34006637	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34098780	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34285930	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34567768	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34668623	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34720222	0.94[EUR][1000 genomes]
rs34903671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34919495	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35132255	0.82[EUR][1000 genomes]
rs35270691	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35336306	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35586328	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35593664	0.86[AMR][1000 genomes]
rs35740552	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35768765	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35868242	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35912963	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4855342	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4855509	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4855510	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4855511	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4855520	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4855526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56909663	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6763155	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6774520	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6774607	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6801847	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71302144	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71302145	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71302146	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71302148	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7642323	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8180031	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv876930	chr3:68844213-68961010	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv876931	chr3:68858280-68961010	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68866400-68868200	Weak transcription	HUVEC	blood vessel
2	chr3:68867200-68872800	Weak transcription	Aorta	Aorta

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