Variant report

Variant	rs34720222
Chromosome Location	chr3:68793165-68793166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11128090	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12054044	1.00[EUR][1000 genomes]
rs12629295	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12633144	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12635072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12638859	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13062535	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13066315	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13093729	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13095333	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13097433	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17047942	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17047968	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17047978	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17047979	1.00[EUR][1000 genomes]
rs17047991	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1948291	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994592	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994593	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34006637	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34098780	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34285930	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34567768	0.94[EUR][1000 genomes]
rs34661976	0.82[EUR][1000 genomes]
rs34668623	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34903671	0.94[EUR][1000 genomes]
rs34919495	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35132255	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35270691	1.00[EUR][1000 genomes]
rs35336306	1.00[EUR][1000 genomes]
rs35586328	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35593664	0.83[AMR][1000 genomes]
rs35740552	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35768765	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35868242	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35912963	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855342	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855509	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855510	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855511	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855520	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4855525	0.94[EUR][1000 genomes]
rs4855526	0.94[EUR][1000 genomes]
rs56909663	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59512855	0.82[EUR][1000 genomes]
rs60226140	0.94[EUR][1000 genomes]
rs6763155	1.00[EUR][1000 genomes]
rs6774520	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6774607	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795777	0.87[ASN][1000 genomes]
rs67984146	0.82[EUR][1000 genomes]
rs6801847	1.00[EUR][1000 genomes]
rs71302144	1.00[EUR][1000 genomes]
rs71302145	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71302146	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71302148	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642323	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8180031	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68789400-68801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68790600-68795400	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:68791200-68794800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:68791400-68793400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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