Variant report

Variant	rs60230188
Chromosome Location	chr3:67822985-67822986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1599208	1.00[AMR][1000 genomes]
rs17046932	1.00[AMR][1000 genomes]
rs28808348	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420241	1.00[AMR][1000 genomes]
rs58065813	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59042613	1.00[AMR][1000 genomes]
rs59316357	1.00[AMR][1000 genomes]
rs60791408	1.00[AMR][1000 genomes]
rs61390227	1.00[AMR][1000 genomes]
rs72919783	1.00[AMR][1000 genomes]
rs72930817	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72930819	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9849582	1.00[AMR][1000 genomes]
rs9856031	1.00[AMR][1000 genomes]
rs9867941	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9990084	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67821800-67823000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:67822200-67823000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:67822400-67823000	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links