Variant report

Variant	rs61390227
Chromosome Location	chr3:67766295-67766296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1599208	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046932	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808348	1.00[AMR][1000 genomes]
rs57420241	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58065813	1.00[AMR][1000 genomes]
rs59042613	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59316357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60230188	1.00[AMR][1000 genomes]
rs60791408	1.00[AMR][1000 genomes]
rs72919783	1.00[AMR][1000 genomes]
rs72930817	1.00[AMR][1000 genomes]
rs72930819	1.00[AMR][1000 genomes]
rs9849582	1.00[AMR][1000 genomes]
rs9856031	1.00[AMR][1000 genomes]
rs9867941	1.00[AMR][1000 genomes]
rs9990084	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67705800-67776000	Weak transcription	Ovary	ovary
2	chr3:67721400-67800400	Weak transcription	Left Ventricle	heart
3	chr3:67764600-67769600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:67764800-67766400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:67765600-67767000	Enhancers	Fetal Lung	lung
6	chr3:67765800-67766400	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links