Variant report

Variant	rs6023037
Chromosome Location	chr20:52825473-52825474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:49345330..49348251-chr20:52823191..52827147,4	MCF-7	breast:
2	chr1:155099597..155102197-chr20:52823453..52826190,2	MCF-7	breast:
3	chr20:52417422..52419776-chr20:52823740..52825810,2	MCF-7	breast:
4	chr2:24427506..24429704-chr20:52824121..52825744,2	MCF-7	breast:
5	chr17:56707891..56709525-chr20:52823914..52825675,2	MCF-7	breast:
6	chr20:52823050..52825968-chr20:55840171..55842066,3	MCF-7	breast:
7	chr20:52824010..52825675-chr3:4920245..4923107,2	MCF-7	breast:
8	chr20:46414702..46417703-chr20:52824331..52826234,3	MCF-7	breast:
9	chr20:52824721..52826787-chr20:55839394..55842032,3	MCF-7	breast:
10	chr20:46413701..46416832-chr20:52824005..52826708,3	MCF-7	breast:
11	chr20:52824614..52827050-chrX:153713627..153715899,2	MCF-7	breast:
12	chr17:57915224..57917032-chr20:52824163..52827087,2	MCF-7	breast:
13	chr20:52209344..52211944-chr20:52823428..52825795,3	MCF-7	breast:
14	chr16:30996907..30999172-chr20:52823827..52825691,2	MCF-7	breast:
15	chr16:765349..767993-chr20:52824649..52827443,2	MCF-7	breast:
16	chr12:120727996..120730746-chr20:52824489..52827020,3	MCF-7	breast:
17	chr17:59489097..59491505-chr20:52824203..52825940,2	MCF-7	breast:
18	chr20:52824220..52825803-chr9:91149500..91151263,2	MCF-7	breast:
19	chr17:59485530..59487637-chr20:52824425..52826103,2	MCF-7	breast:
20	chr12:122238562..122240078-chr20:52823765..52826004,2	MCF-7	breast:
21	chr17:56735044..56737047-chr20:52822984..52826992,5	MCF-7	breast:
22	chr20:52824540..52826280-chr6:26204006..26206221,2	MCF-7	breast:
23	chr20:52825165..52826866-chr6:115066329..115069326,2	MCF-7	breast:
24	chr17:58752920..58755421-chr20:52823131..52825781,2	MCF-7	breast:
25	chr20:52824488..52827444-chr3:64007659..64009363,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124171	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000102178	Chromatin interaction
ENSG00000169242	Chromatin interaction
ENSG00000225563	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000103260	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000130045	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000198399	Chromatin interaction
ENSG00000196562	Chromatin interaction
ENSG00000268863	Chromatin interaction
ENSG00000239126	Chromatin interaction
ENSG00000163636	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000141376	Chromatin interaction
ENSG00000212694	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6013930	1.00[EUR][1000 genomes]
rs6023065	0.85[EUR][1000 genomes]
rs73135202	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73137415	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52824000-52825600	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr20:52824000-52825600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr20:52824000-52825600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:52824000-52825600	Active TSS	Brain Anterior Caudate	brain
5	chr20:52824000-52825600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr20:52824000-52825600	Active TSS	Brain Substantia Nigra	brain
7	chr20:52824000-52825600	Active TSS	Colon Smooth Muscle	Colon
8	chr20:52824000-52825600	Active TSS	Fetal Brain Female	brain
9	chr20:52824000-52825600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr20:52824000-52825600	Active TSS	K562	blood
11	chr20:52824000-52825800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr20:52824000-52825800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr20:52824000-52825800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr20:52824000-52825800	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr20:52824000-52826200	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr20:52824200-52825600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr20:52824200-52825600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr20:52824200-52825600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr20:52824200-52825600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
20	chr20:52824200-52825600	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr20:52824200-52825600	Active TSS	A549	lung
22	chr20:52824200-52825600	Bivalent/Poised TSS	HepG2	liver
23	chr20:52824200-52825600	Active TSS	HSMMtube	muscle
24	chr20:52824200-52825600	Active TSS	NHDF-Ad	bronchial
25	chr20:52824200-52825800	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr20:52824200-52825800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr20:52824200-52825800	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr20:52824200-52825800	Active TSS	Ovary	ovary
29	chr20:52824200-52825800	Active TSS	Psoas Muscle	Psoas
30	chr20:52824200-52825800	Active TSS	Right Ventricle	heart
31	chr20:52824200-52826000	Active TSS	H9 Cell Line	embryonic stem cell
32	chr20:52824200-52826000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr20:52824200-52826000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr20:52824200-52826200	Active TSS	H1 Cell Line	embryonic stem cell
35	chr20:52824200-52826200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr20:52824200-52826400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr20:52824400-52825600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr20:52824400-52825600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr20:52824400-52825600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr20:52824400-52825600	Active TSS	Aorta	Aorta
41	chr20:52824400-52825600	Active TSS	Esophagus	oesophagus
42	chr20:52824400-52825600	Active TSS	Fetal Intestine Large	intestine
43	chr20:52824400-52825600	Active TSS	Gastric	stomach
44	chr20:52824400-52825600	Active TSS	Lung	lung
45	chr20:52824400-52825600	Active TSS	Pancreas	Pancrea
46	chr20:52824400-52825600	Active TSS	HMEC	breast
47	chr20:52824400-52825800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr20:52824400-52825800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr20:52824400-52825800	Active TSS	Fetal Muscle Trunk	muscle
50	chr20:52824400-52825800	Active TSS	Left Ventricle	heart

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