Variant report

Variant	rs6023065
Chromosome Location	chr20:52862937-52862938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:52823769..52826753-chr20:52862832..52866442,3	MCF-7	breast:
2	chr20:52854512..52856527-chr20:52861978..52864576,3	MCF-7	breast:
3	chr20:52862270..52864864-chr20:52907686..52911430,3	MCF-7	breast:
4	chr20:52846307..52849581-chr20:52862205..52864323,3	MCF-7	breast:
5	chr20:52824622..52827357-chr20:52861656..52863680,2	MCF-7	breast:
6	chr20:52861957..52864454-chr20:52866467..52868333,2	MCF-7	breast:
7	chr20:52862806..52864902-chr6:27860738..27862382,2	MCF-7	breast:
8	chr20:52848398..52850983-chr20:52861832..52863422,2	MCF-7	breast:
9	chr20:52861825..52864272-chr20:52956863..52959337,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000101132	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1382013	0.92[EUR][1000 genomes]
rs16999452	0.92[EUR][1000 genomes]
rs16999487	0.83[EUR][1000 genomes]
rs16999504	0.83[EUR][1000 genomes]
rs2219733	0.92[EUR][1000 genomes]
rs28373824	0.92[EUR][1000 genomes]
rs28516647	0.92[EUR][1000 genomes]
rs2870321	0.92[EUR][1000 genomes]
rs4289245	0.92[EUR][1000 genomes]
rs4493332	0.92[EUR][1000 genomes]
rs4541294	0.92[EUR][1000 genomes]
rs4599177	0.92[EUR][1000 genomes]
rs4619676	0.92[EUR][1000 genomes]
rs56149353	0.92[EUR][1000 genomes]
rs56268746	0.92[EUR][1000 genomes]
rs58025571	0.92[EUR][1000 genomes]
rs58475917	0.92[EUR][1000 genomes]
rs58894404	0.92[EUR][1000 genomes]
rs59811202	0.92[EUR][1000 genomes]
rs6013930	0.85[EUR][1000 genomes]
rs6013973	0.84[EUR][1000 genomes]
rs6013974	0.84[EUR][1000 genomes]
rs6013980	0.83[EUR][1000 genomes]
rs6013981	0.83[EUR][1000 genomes]
rs6023037	0.85[EUR][1000 genomes]
rs6023109	0.92[EUR][1000 genomes]
rs6023111	0.92[EUR][1000 genomes]
rs6023113	0.92[EUR][1000 genomes]
rs6023114	0.92[EUR][1000 genomes]
rs6023116	0.92[EUR][1000 genomes]
rs6023118	0.92[EUR][1000 genomes]
rs6023119	0.92[EUR][1000 genomes]
rs6023120	0.92[EUR][1000 genomes]
rs6023124	0.92[EUR][1000 genomes]
rs6023126	0.92[EUR][1000 genomes]
rs6023128	0.84[EUR][1000 genomes]
rs6023144	0.83[EUR][1000 genomes]
rs60336241	1.00[AMR][1000 genomes]
rs723128	0.92[EUR][1000 genomes]
rs7265137	0.92[EUR][1000 genomes]
rs7265354	0.92[EUR][1000 genomes]
rs73135202	0.85[EUR][1000 genomes]
rs73137415	1.00[EUR][1000 genomes]
rs73137426	0.92[EUR][1000 genomes]
rs73137431	0.92[EUR][1000 genomes]
rs73137432	0.92[EUR][1000 genomes]
rs73137433	0.92[EUR][1000 genomes]
rs73137434	0.92[EUR][1000 genomes]
rs73137435	0.92[EUR][1000 genomes]
rs73137442	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73137444	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73137446	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73137451	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73139406	0.84[EUR][1000 genomes]
rs73139426	0.84[EUR][1000 genomes]
rs73139427	0.92[EUR][1000 genomes]
rs73139465	0.92[EUR][1000 genomes]
rs73139467	0.92[EUR][1000 genomes]
rs73139469	0.92[EUR][1000 genomes]
rs73139472	0.92[EUR][1000 genomes]
rs73139477	0.92[EUR][1000 genomes]
rs7347628	0.92[EUR][1000 genomes]
rs8119798	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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