Variant report

Variant	rs73139426
Chromosome Location	chr20:52925497-52925498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:52881900..52884717-chr20:52925408..52927187,2	MCF-7	breast:
2	chr20:52923632..52926364-chr20:52926650..52929482,4	MCF-7	breast:
3	chr20:52924066..52926760-chr20:56284105..56286787,2	MCF-7	breast:
4	chr20:52911450..52915662-chr20:52921093..52925920,4	MCF-7	breast:
5	chr20:52863453..52865968-chr20:52924698..52926232,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124225	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1382013	0.92[EUR][1000 genomes]
rs1477733	0.92[EUR][1000 genomes]
rs16999379	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16999452	0.92[EUR][1000 genomes]
rs16999487	0.83[EUR][1000 genomes]
rs16999504	0.83[EUR][1000 genomes]
rs2219733	0.92[EUR][1000 genomes]
rs28373824	0.92[EUR][1000 genomes]
rs28516647	0.92[EUR][1000 genomes]
rs2870321	0.92[EUR][1000 genomes]
rs41428148	0.92[EUR][1000 genomes]
rs4289245	0.92[EUR][1000 genomes]
rs4493332	0.92[EUR][1000 genomes]
rs4541294	0.92[EUR][1000 genomes]
rs4599177	0.92[EUR][1000 genomes]
rs4619676	0.92[EUR][1000 genomes]
rs56149353	0.92[EUR][1000 genomes]
rs56268746	0.92[EUR][1000 genomes]
rs58025571	0.92[EUR][1000 genomes]
rs58475917	0.92[EUR][1000 genomes]
rs58894404	0.92[EUR][1000 genomes]
rs59811202	0.92[EUR][1000 genomes]
rs6013973	0.84[EUR][1000 genomes]
rs6013974	0.84[EUR][1000 genomes]
rs6013980	0.83[EUR][1000 genomes]
rs6013981	0.83[EUR][1000 genomes]
rs6023065	0.84[EUR][1000 genomes]
rs6023109	0.92[EUR][1000 genomes]
rs6023111	0.92[EUR][1000 genomes]
rs6023113	0.92[EUR][1000 genomes]
rs6023114	0.92[EUR][1000 genomes]
rs6023116	0.92[EUR][1000 genomes]
rs6023118	0.92[EUR][1000 genomes]
rs6023119	0.92[EUR][1000 genomes]
rs6023120	0.92[EUR][1000 genomes]
rs6023124	0.92[EUR][1000 genomes]
rs6023126	0.92[EUR][1000 genomes]
rs6023128	0.84[EUR][1000 genomes]
rs6023144	0.83[EUR][1000 genomes]
rs61006519	0.92[EUR][1000 genomes]
rs723128	0.92[EUR][1000 genomes]
rs7265137	0.92[EUR][1000 genomes]
rs7265354	0.92[EUR][1000 genomes]
rs7272945	0.92[EUR][1000 genomes]
rs73137415	0.84[EUR][1000 genomes]
rs73137442	0.84[EUR][1000 genomes]
rs73137444	0.84[EUR][1000 genomes]
rs73137446	0.84[EUR][1000 genomes]
rs73137451	0.84[EUR][1000 genomes]
rs73137474	0.92[EUR][1000 genomes]
rs73137475	0.92[EUR][1000 genomes]
rs73137483	0.92[EUR][1000 genomes]
rs73139406	0.84[EUR][1000 genomes]
rs73139427	0.92[EUR][1000 genomes]
rs73139465	0.92[EUR][1000 genomes]
rs73139467	0.92[EUR][1000 genomes]
rs73139469	0.92[EUR][1000 genomes]
rs73139472	0.92[EUR][1000 genomes]
rs73139477	0.92[EUR][1000 genomes]
rs7347628	0.92[EUR][1000 genomes]
rs8119798	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52925400-52926000	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links