Variant report

Variant	rs61006519
Chromosome Location	chr20:52899158-52899159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:52823411..52826205-chr20:52895497..52899712,3	MCF-7	breast:
2	chr20:52835609..52839947-chr20:52897046..52901468,5	MCF-7	breast:
3	chr20:52823385..52825009-chr20:52898097..52901068,2	MCF-7	breast:
4	chr20:52897965..52899622-chr20:52923358..52924887,2	MCF-7	breast:
5	chr20:52898596..52901613-chr20:52930745..52932671,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101132	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1382013	0.84[EUR][1000 genomes]
rs1477733	1.00[EUR][1000 genomes]
rs16999291	0.82[AFR][1000 genomes]
rs16999379	0.85[EUR][1000 genomes]
rs16999452	0.84[EUR][1000 genomes]
rs2219733	0.84[EUR][1000 genomes]
rs28373824	0.84[EUR][1000 genomes]
rs28516647	0.84[EUR][1000 genomes]
rs2870321	0.84[EUR][1000 genomes]
rs41428148	1.00[EUR][1000 genomes]
rs4289245	0.84[EUR][1000 genomes]
rs4493332	0.84[EUR][1000 genomes]
rs4541294	0.84[EUR][1000 genomes]
rs4599177	0.84[EUR][1000 genomes]
rs4619676	0.84[EUR][1000 genomes]
rs56149353	0.84[EUR][1000 genomes]
rs56268746	0.84[EUR][1000 genomes]
rs57095301	0.91[AFR][1000 genomes]
rs58025571	0.84[EUR][1000 genomes]
rs58144675	0.81[AFR][1000 genomes]
rs58475917	0.84[EUR][1000 genomes]
rs58589526	0.81[EUR][1000 genomes]
rs58894404	0.84[EUR][1000 genomes]
rs59811202	0.84[EUR][1000 genomes]
rs6023109	0.84[EUR][1000 genomes]
rs6023111	0.84[EUR][1000 genomes]
rs6023113	0.84[EUR][1000 genomes]
rs6023114	0.84[EUR][1000 genomes]
rs6023116	0.84[EUR][1000 genomes]
rs6023118	0.84[EUR][1000 genomes]
rs6023119	0.84[EUR][1000 genomes]
rs6023120	0.84[EUR][1000 genomes]
rs6023124	0.84[EUR][1000 genomes]
rs6023126	0.84[EUR][1000 genomes]
rs723128	0.84[EUR][1000 genomes]
rs7265137	0.84[EUR][1000 genomes]
rs7265354	0.84[EUR][1000 genomes]
rs7272945	1.00[EUR][1000 genomes]
rs73137474	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73137475	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73137483	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73139406	0.92[EUR][1000 genomes]
rs73139426	0.92[EUR][1000 genomes]
rs73139427	0.84[EUR][1000 genomes]
rs73139465	0.84[EUR][1000 genomes]
rs73139467	0.84[EUR][1000 genomes]
rs73139469	0.84[EUR][1000 genomes]
rs73139472	0.84[EUR][1000 genomes]
rs73139477	0.84[EUR][1000 genomes]
rs7347628	0.84[EUR][1000 genomes]
rs73914338	0.87[AFR][1000 genomes]
rs73914339	0.96[AFR][1000 genomes]
rs8119798	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52895400-52899200	Weak transcription	Fetal Brain Male	brain

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