Variant report

Variant	rs57095301
Chromosome Location	chr20:52889242-52889243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16999265	1.00[EUR][1000 genomes]
rs16999283	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16999288	1.00[EUR][1000 genomes]
rs16999291	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58027221	1.00[EUR][1000 genomes]
rs58144675	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59946156	1.00[EUR][1000 genomes]
rs61006519	0.91[AFR][1000 genomes]
rs7262882	0.82[AFR][1000 genomes]
rs7263226	1.00[EUR][1000 genomes]
rs7264698	1.00[EUR][1000 genomes]
rs7270801	1.00[EUR][1000 genomes]
rs73914338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73914339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv178887	chr20:52885413-52894836	Enhancers Weak transcription	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52884000-52889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:52885000-52889600	Weak transcription	Pancreas	Pancrea
3	chr20:52885200-52889600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr20:52885200-52889600	Weak transcription	Ovary	ovary
5	chr20:52885800-52889600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr20:52889000-52890000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr20:52889200-52889800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr20:52889200-52889800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr20:52889200-52890000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr20:52889200-52890000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr20:52889200-52890000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr20:52889200-52890000	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links