Variant report

Variant	rs7270801
Chromosome Location	chr20:52846586-52846587
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52844972..52848737-chr20:53072489..53075619,3	MCF-7	breast:
2	chr1:121484850..121486543-chr20:52844002..52846741,2	MCF-7	breast:
3	chr20:52846290..52849195-chr20:53053763..53055378,2	MCF-7	breast:
4	chr20:52843581..52850062-chr20:52850195..52855343,9	MCF-7	breast:
5	chr20:52838765..52840477-chr20:52844593..52846830,2	K562	blood:
6	chr20:52844235..52847493-chr20:52876743..52879429,3	MCF-7	breast:
7	chr20:52846307..52849581-chr20:52862205..52864323,3	MCF-7	breast:
8	chr20:52845835..52847665-chr20:52881455..52883980,2	MCF-7	breast:
9	chr20:52838977..52840544-chr20:52845330..52847377,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10485794	0.81[AFR][1000 genomes]
rs16999265	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16999283	1.00[EUR][1000 genomes]
rs16999288	1.00[EUR][1000 genomes]
rs16999291	1.00[EUR][1000 genomes]
rs57095301	1.00[EUR][1000 genomes]
rs58027221	1.00[EUR][1000 genomes]
rs58144675	1.00[EUR][1000 genomes]
rs59946156	1.00[EUR][1000 genomes]
rs7263226	1.00[EUR][1000 genomes]
rs7264698	1.00[EUR][1000 genomes]
rs73914338	1.00[EUR][1000 genomes]
rs73914339	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52829400-52847400	Weak transcription	Aorta	Aorta
2	chr20:52829600-52847600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:52840600-52849000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr20:52840800-52849000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:52841000-52851000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr20:52845600-52847800	Enhancers	Fetal Lung	lung
7	chr20:52846200-52847400	Weak transcription	HSMM	muscle
8	chr20:52846400-52847400	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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