Variant report

Variant	rs60266623
Chromosome Location	chr22:31320628-31320629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31318522..31320087-chr22:31320410..31322859,2	MCF-7	breast:
2	chr22:31319777..31322266-chr22:31479907..31481786,2	MCF-7	breast:
3	chr22:31318826..31320833-chr22:31327082..31329835,2	K562	blood:

Variant related genes	Relation type
ENSG00000183963	Chromatin interaction
ENSG00000133422	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58583935	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59148334	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61151878	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31278600-31321400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:31295400-31321000	Weak transcription	HSMMtube	muscle
3	chr22:31304200-31320800	Weak transcription	Gastric	stomach
4	chr22:31316800-31323000	Weak transcription	Hela-S3	cervix
5	chr22:31317600-31320800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr22:31317600-31323000	Weak transcription	A549	lung
7	chr22:31317600-31324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr22:31317600-31364000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr22:31317800-31323200	Weak transcription	HMEC	breast
10	chr22:31318200-31320800	Weak transcription	NH-A	brain
11	chr22:31318200-31320800	Weak transcription	NHEK	skin
12	chr22:31318200-31321600	Weak transcription	Esophagus	oesophagus
13	chr22:31318400-31320800	Weak transcription	HSMM	muscle
14	chr22:31318400-31321200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr22:31318400-31321200	Weak transcription	Fetal Lung	lung
16	chr22:31318400-31321200	Weak transcription	Right Ventricle	heart
17	chr22:31318400-31321400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr22:31318400-31321400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr22:31318400-31322800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr22:31318400-31322800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr22:31318400-31324400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr22:31318400-31342200	Weak transcription	Right Atrium	heart
23	chr22:31318600-31320800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr22:31318600-31320800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr22:31318600-31320800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr22:31318600-31320800	Weak transcription	Brain Angular Gyrus	brain
27	chr22:31318600-31320800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr22:31318600-31320800	Weak transcription	Fetal Thymus	thymus
29	chr22:31318600-31320800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr22:31318600-31320800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr22:31318600-31320800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr22:31318600-31320800	Weak transcription	Osteobl	bone
33	chr22:31318600-31321000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr22:31318600-31321000	Weak transcription	Brain Substantia Nigra	brain
35	chr22:31318600-31321000	Weak transcription	Fetal Intestine Large	intestine
36	chr22:31318600-31321000	Weak transcription	Left Ventricle	heart
37	chr22:31318600-31321200	Weak transcription	Primary B cells from cord blood	blood
38	chr22:31318600-31321400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr22:31318600-31321400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr22:31318600-31321400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr22:31318600-31321400	Weak transcription	Brain Anterior Caudate	brain
42	chr22:31318600-31321400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr22:31318600-31321400	Weak transcription	Ovary	ovary
44	chr22:31318600-31321400	Weak transcription	Pancreas	Pancrea
45	chr22:31318600-31321400	Weak transcription	Psoas Muscle	Psoas
46	chr22:31318600-31321400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr22:31318600-31321400	Weak transcription	HUVEC	blood vessel
48	chr22:31318600-31321400	Weak transcription	NHDF-Ad	bronchial
49	chr22:31318600-31321400	Weak transcription	NHLF	lung
50	chr22:31318600-31322000	Weak transcription	Colonic Mucosa	Colon

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