Variant report

Variant	rs59148334
Chromosome Location	chr22:31349259-31349260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:31342101..31344498-chr22:31347434..31350344,2	MCF-7	breast:
2	chr22:31348191..31351392-chr22:31476654..31479951,4	MCF-7	breast:
3	chr22:31347305..31349753-chr22:31482112..31484040,2	K562	blood:
4	chr22:31345220..31348145-chr22:31348354..31350638,2	K562	blood:
5	chr22:31348197..31350868-chr22:31363175..31365908,3	MCF-7	breast:
6	chr22:31348730..31351092-chr22:31359078..31361290,2	MCF-7	breast:
7	chr22:31343088..31344789-chr22:31347594..31349284,2	K562	blood:
8	chr22:31343088..31345348-chr22:31346142..31349284,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000133422	Chromatin interaction
ENSG00000183963	Chromatin interaction
ENSG00000273387	Chromatin interaction

rs_ID	r²[population]
rs56686418	0.89[ASN][1000 genomes]
rs56715005	1.00[ASN][1000 genomes]
rs58583935	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60266623	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61151878	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9619152	1.00[ASN][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31317600-31364000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:31319200-31350800	Strong transcription	Brain Germinal Matrix	brain
3	chr22:31319200-31351800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:31319800-31353200	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr22:31319800-31355800	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr22:31320000-31354600	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr22:31320000-31355600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr22:31320200-31353400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr22:31320200-31354800	Strong transcription	H9 Cell Line	embryonic stem cell
10	chr22:31320200-31355600	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr22:31320200-31355800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr22:31320600-31354400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr22:31320600-31354400	Strong transcription	HepG2	liver
14	chr22:31320800-31352600	Strong transcription	Fetal Thymus	thymus
15	chr22:31321000-31352800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr22:31321000-31353400	Strong transcription	Fetal Intestine Large	intestine
17	chr22:31321200-31350000	Strong transcription	Fetal Lung	lung
18	chr22:31324800-31360400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr22:31325600-31351600	Strong transcription	Fetal Brain Female	brain
20	chr22:31326200-31349600	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr22:31326200-31351800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr22:31328200-31351000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
23	chr22:31337200-31352800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr22:31338400-31351600	Weak transcription	Stomach Mucosa	stomach
25	chr22:31339800-31349400	Strong transcription	Dnd41	blood
26	chr22:31340000-31351000	Strong transcription	Primary B cells from cord blood	blood
27	chr22:31340200-31352800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr22:31340400-31353400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr22:31342400-31361000	Weak transcription	Small Intestine	intestine
30	chr22:31342600-31351600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr22:31343800-31353400	Strong transcription	Fetal Muscle Leg	muscle
32	chr22:31343800-31356400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr22:31344000-31352800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr22:31344200-31349800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr22:31344200-31352600	Strong transcription	Left Ventricle	heart
36	chr22:31344200-31352800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr22:31344600-31350800	Strong transcription	Adipose Nuclei	Adipose
38	chr22:31344600-31363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr22:31344800-31349800	Strong transcription	Right Ventricle	heart
40	chr22:31344800-31354200	Strong transcription	HSMM	muscle
41	chr22:31344800-31361600	Weak transcription	Fetal Heart	heart
42	chr22:31345000-31349800	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr22:31345200-31351600	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr22:31345200-31353400	Strong transcription	Stomach Smooth Muscle	stomach
45	chr22:31345200-31354600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr22:31345400-31353400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr22:31345400-31364000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr22:31345600-31350200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr22:31345600-31351800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr22:31345600-31353400	Strong transcription	Osteobl	bone

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