Variant report
| Variant | rs56686418 |
|---|---|
| Chromosome Location | chr22:31388971-31388972 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266980 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs11089483 | 1.00[EUR][1000 genomes] |
| rs12158256 | 1.00[EUR][1000 genomes] |
| rs12166075 | 1.00[EUR][1000 genomes] |
| rs12166445 | 1.00[EUR][1000 genomes] |
| rs12166521 | 1.00[EUR][1000 genomes] |
| rs12166797 | 1.00[EUR][1000 genomes] |
| rs12167130 | 1.00[EUR][1000 genomes] |
| rs12168605 | 1.00[EUR][1000 genomes] |
| rs12168997 | 1.00[EUR][1000 genomes] |
| rs12169136 | 1.00[EUR][1000 genomes] |
| rs12170790 | 1.00[EUR][1000 genomes] |
| rs13433649 | 1.00[EUR][1000 genomes] |
| rs16989109 | 1.00[EUR][1000 genomes] |
| rs16989230 | 1.00[EUR][1000 genomes] |
| rs2232171 | 1.00[EUR][1000 genomes] |
| rs2232180 | 1.00[EUR][1000 genomes] |
| rs28428739 | 1.00[EUR][1000 genomes] |
| rs35239241 | 1.00[EUR][1000 genomes] |
| rs56715005 | 0.89[ASN][1000 genomes] |
| rs58583935 | 1.00[ASN][1000 genomes] |
| rs59148334 | 0.89[ASN][1000 genomes] |
| rs5994374 | 1.00[EUR][1000 genomes] |
| rs5997890 | 1.00[EUR][1000 genomes] |
| rs61736799 | 1.00[EUR][1000 genomes] |
| rs7284605 | 1.00[EUR][1000 genomes] |
| rs9619138 | 1.00[EUR][1000 genomes] |
| rs9619139 | 1.00[EUR][1000 genomes] |
| rs9619140 | 1.00[EUR][1000 genomes] |
| rs9619152 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9619154 | 1.00[EUR][1000 genomes] |
| rs9621106 | 1.00[EUR][1000 genomes] |
| rs9621111 | 1.00[EUR][1000 genomes] |
| rs9621121 | 1.00[EUR][1000 genomes] |
| rs9621129 | 1.00[EUR][1000 genomes] |
| rs9621131 | 1.00[EUR][1000 genomes] |
| rs9621146 | 1.00[EUR][1000 genomes] |
| rs9621150 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9896 | chr22:31369204-31513933 | Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:31387600-31390800 | Weak transcription | K562 | blood |
| 2 | chr22:31388200-31389600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 3 | chr22:31388800-31389000 | Enhancers | Gastric | stomach |
