Variant report

Variant	rs12170790
Chromosome Location	chr22:31542441-31542442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11089483	1.00[EUR][1000 genomes]
rs12158256	1.00[EUR][1000 genomes]
rs12158662	1.00[EUR][1000 genomes]
rs12166075	1.00[EUR][1000 genomes]
rs12166797	1.00[EUR][1000 genomes]
rs12167130	1.00[EUR][1000 genomes]
rs12167410	1.00[AFR][1000 genomes]
rs12168605	1.00[EUR][1000 genomes]
rs13433649	1.00[EUR][1000 genomes]
rs16989230	1.00[EUR][1000 genomes]
rs2232171	1.00[EUR][1000 genomes]
rs2232180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28428739	1.00[EUR][1000 genomes]
rs35239241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56686418	1.00[EUR][1000 genomes]
rs5994374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5997890	1.00[EUR][1000 genomes]
rs5997936	1.00[EUR][1000 genomes]
rs61736799	1.00[EUR][1000 genomes]
rs9619152	1.00[EUR][1000 genomes]
rs9619154	1.00[EUR][1000 genomes]
rs9621146	1.00[EUR][1000 genomes]
rs9621150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv914976	chr22:31475307-31543260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31539600-31543800	Weak transcription	Right Atrium	heart
2	chr22:31539600-31544800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr22:31540000-31544400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr22:31540000-31544600	Weak transcription	Brain Hippocampus Middle	brain
5	chr22:31540000-31544800	Weak transcription	Brain Substantia Nigra	brain
6	chr22:31540400-31544800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr22:31540800-31544600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr22:31541000-31544600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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