Variant report

Variant	rs11089483
Chromosome Location	chr22:31320322-31320323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31319777..31322266-chr22:31479907..31481786,2	MCF-7	breast:
2	chr22:31318826..31320833-chr22:31327082..31329835,2	K562	blood:

Variant related genes	Relation type
ENSG00000133422	Chromatin interaction
ENSG00000183963	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11089485	1.00[CEU][hapmap]
rs12166075	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12166445	1.00[EUR][1000 genomes]
rs12166521	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12166797	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12167130	1.00[EUR][1000 genomes]
rs12168605	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12168997	1.00[EUR][1000 genomes]
rs12169136	1.00[EUR][1000 genomes]
rs12170790	1.00[EUR][1000 genomes]
rs13433649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989109	1.00[EUR][1000 genomes]
rs16989230	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2232171	1.00[EUR][1000 genomes]
rs2232180	1.00[EUR][1000 genomes]
rs2269896	0.91[YRI][hapmap]
rs28428739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35239241	1.00[EUR][1000 genomes]
rs56686418	1.00[EUR][1000 genomes]
rs5994374	1.00[EUR][1000 genomes]
rs5997890	1.00[EUR][1000 genomes]
rs7284605	1.00[EUR][1000 genomes]
rs9619138	1.00[EUR][1000 genomes]
rs9619139	1.00[EUR][1000 genomes]
rs9619140	1.00[EUR][1000 genomes]
rs9619152	1.00[EUR][1000 genomes]
rs9619154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621106	1.00[EUR][1000 genomes]
rs9621111	1.00[EUR][1000 genomes]
rs9621121	1.00[EUR][1000 genomes]
rs9621129	1.00[EUR][1000 genomes]
rs9621131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621146	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621151	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31278600-31321400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:31290800-31320600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr22:31295400-31321000	Weak transcription	HSMMtube	muscle
4	chr22:31300200-31320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr22:31304200-31320800	Weak transcription	Gastric	stomach
6	chr22:31304600-31320400	Weak transcription	Lung	lung
7	chr22:31316200-31320600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr22:31316800-31323000	Weak transcription	Hela-S3	cervix
9	chr22:31317600-31320800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr22:31317600-31323000	Weak transcription	A549	lung
11	chr22:31317600-31324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr22:31317600-31364000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr22:31317800-31323200	Weak transcription	HMEC	breast
14	chr22:31318200-31320800	Weak transcription	NH-A	brain
15	chr22:31318200-31320800	Weak transcription	NHEK	skin
16	chr22:31318200-31321600	Weak transcription	Esophagus	oesophagus
17	chr22:31318400-31320400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr22:31318400-31320400	Weak transcription	Aorta	Aorta
19	chr22:31318400-31320800	Weak transcription	HSMM	muscle
20	chr22:31318400-31321200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr22:31318400-31321200	Weak transcription	Fetal Lung	lung
22	chr22:31318400-31321200	Weak transcription	Right Ventricle	heart
23	chr22:31318400-31321400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr22:31318400-31321400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr22:31318400-31322800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr22:31318400-31322800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr22:31318400-31324400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr22:31318400-31342200	Weak transcription	Right Atrium	heart
29	chr22:31318600-31320400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr22:31318600-31320400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr22:31318600-31320600	Weak transcription	Adipose Nuclei	Adipose
32	chr22:31318600-31320600	Weak transcription	Liver	Liver
33	chr22:31318600-31320600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr22:31318600-31320600	Weak transcription	Spleen	Spleen
35	chr22:31318600-31320800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr22:31318600-31320800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr22:31318600-31320800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr22:31318600-31320800	Weak transcription	Brain Angular Gyrus	brain
39	chr22:31318600-31320800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr22:31318600-31320800	Weak transcription	Fetal Thymus	thymus
41	chr22:31318600-31320800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr22:31318600-31320800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr22:31318600-31320800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr22:31318600-31320800	Weak transcription	Osteobl	bone
45	chr22:31318600-31321000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr22:31318600-31321000	Weak transcription	Brain Substantia Nigra	brain
47	chr22:31318600-31321000	Weak transcription	Fetal Intestine Large	intestine
48	chr22:31318600-31321000	Weak transcription	Left Ventricle	heart
49	chr22:31318600-31321200	Weak transcription	Primary B cells from cord blood	blood
50	chr22:31318600-31321400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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