Variant report

Variant	rs16989109
Chromosome Location	chr22:31189055-31189056
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11089483	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11089485	1.00[CEU][hapmap]
rs12166075	1.00[EUR][1000 genomes]
rs12166445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12166521	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12166797	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12167130	1.00[EUR][1000 genomes]
rs12168605	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12168997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12169136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13433649	1.00[EUR][1000 genomes]
rs16989230	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28428739	1.00[EUR][1000 genomes]
rs34199962	1.00[AMR][1000 genomes]
rs56686418	1.00[EUR][1000 genomes]
rs7284605	1.00[EUR][1000 genomes]
rs7286107	1.00[CEU][hapmap]
rs8137501	1.00[CEU][hapmap]
rs9619138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9619139	1.00[EUR][1000 genomes]
rs9619140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9619152	1.00[EUR][1000 genomes]
rs9619154	1.00[EUR][1000 genomes]
rs9621106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621111	1.00[EUR][1000 genomes]
rs9621121	1.00[EUR][1000 genomes]
rs9621129	1.00[EUR][1000 genomes]
rs9621131	1.00[EUR][1000 genomes]
rs9621146	1.00[EUR][1000 genomes]
rs9621150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31172800-31189400	Weak transcription	Fetal Heart	heart
2	chr22:31173800-31198200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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