Variant report

Variant	rs13433649
Chromosome Location	chr22:31308344-31308345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11089483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12166075	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12166445	1.00[EUR][1000 genomes]
rs12166521	1.00[EUR][1000 genomes]
rs12166797	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12167130	1.00[EUR][1000 genomes]
rs12168605	1.00[EUR][1000 genomes]
rs12168997	1.00[EUR][1000 genomes]
rs12169136	1.00[EUR][1000 genomes]
rs12170790	1.00[EUR][1000 genomes]
rs16989109	1.00[EUR][1000 genomes]
rs16989230	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2232171	1.00[EUR][1000 genomes]
rs2232180	1.00[EUR][1000 genomes]
rs28428739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35239241	1.00[EUR][1000 genomes]
rs56686418	1.00[EUR][1000 genomes]
rs5994374	1.00[EUR][1000 genomes]
rs7284605	1.00[EUR][1000 genomes]
rs9619138	1.00[EUR][1000 genomes]
rs9619139	1.00[EUR][1000 genomes]
rs9619140	1.00[EUR][1000 genomes]
rs9619152	1.00[EUR][1000 genomes]
rs9619154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621106	1.00[EUR][1000 genomes]
rs9621111	1.00[EUR][1000 genomes]
rs9621121	1.00[EUR][1000 genomes]
rs9621129	1.00[EUR][1000 genomes]
rs9621131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621146	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621151	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31274200-31308400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr22:31278600-31321400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr22:31283600-31318400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr22:31284400-31308400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr22:31288400-31316400	Weak transcription	Thymus	Thymus
6	chr22:31290200-31308400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr22:31290400-31316600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr22:31290600-31316200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr22:31290800-31320600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr22:31291000-31316200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr22:31291200-31316200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr22:31291400-31315400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr22:31293800-31310200	Weak transcription	Hela-S3	cervix
14	chr22:31294800-31309400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr22:31295400-31321000	Weak transcription	HSMMtube	muscle
16	chr22:31296200-31309000	Weak transcription	Left Ventricle	heart
17	chr22:31296800-31310600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr22:31297400-31309400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr22:31299200-31309800	Weak transcription	Primary B cells from cord blood	blood
20	chr22:31299600-31308800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr22:31299600-31316600	Weak transcription	NHEK	skin
22	chr22:31299800-31317000	Weak transcription	Brain Angular Gyrus	brain
23	chr22:31300200-31308600	Weak transcription	Esophagus	oesophagus
24	chr22:31300200-31308800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr22:31300200-31308800	Weak transcription	Right Ventricle	heart
26	chr22:31300200-31316200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr22:31300200-31320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr22:31300400-31309000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr22:31300400-31311600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr22:31300400-31311800	Weak transcription	Adipose Nuclei	Adipose
31	chr22:31300800-31311600	Weak transcription	Liver	Liver
32	chr22:31302800-31308400	Weak transcription	Brain Substantia Nigra	brain
33	chr22:31304200-31317200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr22:31304200-31318000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr22:31304200-31320800	Weak transcription	Gastric	stomach
36	chr22:31304400-31317000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr22:31304600-31309000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr22:31304600-31320400	Weak transcription	Lung	lung
39	chr22:31304800-31316000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr22:31305600-31317400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr22:31305600-31319200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr22:31305600-31320200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr22:31305800-31317200	Weak transcription	Ovary	ovary
44	chr22:31305800-31317200	Weak transcription	Pancreas	Pancrea
45	chr22:31305800-31318200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr22:31306000-31310800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr22:31306000-31319600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr22:31306200-31309400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr22:31306400-31308600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr22:31306600-31308400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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