Variant report

Variant	rs16989230
Chromosome Location	chr22:31357648-31357649
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:31357443-31357655	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:31356394..31358670-chr22:31361446..31363174,2	MCF-7	breast:
2	chr22:31341646..31347156-chr22:31356738..31361617,7	K562	blood:
3	chr22:31355920..31358724-chr22:31359423..31361158,2	MCF-7	breast:
4	chr22:31354949..31372607-chr22:31475365..31485377,53	MCF-7	breast:
5	chr22:31357396..31359694-chr22:31367585..31370526,2	K562	blood:
6	chr22:31357301..31361303-chr22:31361613..31367076,8	K562	blood:
7	chr22:31357365..31359982-chr22:31491835..31493430,2	MCF-7	breast:
8	chr22:31346340..31348040-chr22:31355865..31358593,2	MCF-7	breast:
9	chr22:31352100..31354247-chr22:31356334..31359258,2	K562	blood:

No data

Variant related genes	Relation type
MORC2	TF binding region
ENSG00000273387	Chromatin interaction
ENSG00000253352	Chromatin interaction
ENSG00000183963	Chromatin interaction
ENSG00000133422	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11089483	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11089485	1.00[CEU][hapmap]
rs12158256	1.00[EUR][1000 genomes]
rs12166075	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12166445	1.00[EUR][1000 genomes]
rs12166521	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12166797	1.00[CEU][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12167130	1.00[EUR][1000 genomes]
rs12168605	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12168997	1.00[EUR][1000 genomes]
rs12169136	1.00[EUR][1000 genomes]
rs12170790	1.00[EUR][1000 genomes]
rs13433649	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989109	1.00[EUR][1000 genomes]
rs2232171	1.00[EUR][1000 genomes]
rs2232180	1.00[EUR][1000 genomes]
rs2269896	0.83[YRI][hapmap]
rs28428739	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35239241	1.00[EUR][1000 genomes]
rs56686418	1.00[EUR][1000 genomes]
rs5994374	1.00[EUR][1000 genomes]
rs5997890	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7284605	1.00[EUR][1000 genomes]
rs9619138	1.00[EUR][1000 genomes]
rs9619139	1.00[EUR][1000 genomes]
rs9619140	1.00[EUR][1000 genomes]
rs9619152	1.00[EUR][1000 genomes]
rs9619154	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621106	1.00[EUR][1000 genomes]
rs9621111	1.00[EUR][1000 genomes]
rs9621121	1.00[EUR][1000 genomes]
rs9621129	1.00[EUR][1000 genomes]
rs9621131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621146	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621151	1.00[AMR][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31317600-31364000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:31324800-31360400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr22:31342400-31361000	Weak transcription	Small Intestine	intestine
4	chr22:31344600-31363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr22:31344800-31361600	Weak transcription	Fetal Heart	heart
6	chr22:31345400-31364000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:31345600-31364200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr22:31346000-31364400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr22:31346200-31364200	Weak transcription	Brain Substantia Nigra	brain
10	chr22:31347200-31363000	Weak transcription	Colon Smooth Muscle	Colon
11	chr22:31347200-31364400	Weak transcription	Esophagus	oesophagus
12	chr22:31347400-31359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr22:31347400-31362400	Weak transcription	Gastric	stomach
14	chr22:31347400-31362400	Weak transcription	Lung	lung
15	chr22:31347400-31363000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr22:31347400-31363800	Weak transcription	NHLF	lung
17	chr22:31347600-31359400	Weak transcription	Pancreas	Pancrea
18	chr22:31347600-31363000	Weak transcription	Spleen	Spleen
19	chr22:31347600-31363400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr22:31347600-31363400	Weak transcription	HMEC	breast
21	chr22:31347600-31364000	Weak transcription	Fetal Kidney	kidney
22	chr22:31348000-31358200	Weak transcription	Fetal Intestine Small	intestine
23	chr22:31348600-31362800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr22:31348800-31363000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr22:31348800-31363800	Weak transcription	Brain Angular Gyrus	brain
26	chr22:31348800-31364000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr22:31349000-31363000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr22:31349000-31364400	Weak transcription	Aorta	Aorta
29	chr22:31349200-31359600	Weak transcription	K562	blood
30	chr22:31349200-31360400	Weak transcription	Hela-S3	cervix
31	chr22:31349200-31363600	Weak transcription	Brain Hippocampus Middle	brain
32	chr22:31349200-31364200	Weak transcription	Thymus	Thymus
33	chr22:31349400-31359800	Weak transcription	Dnd41	blood
34	chr22:31349400-31364400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr22:31349600-31359800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr22:31349800-31360000	Weak transcription	Right Ventricle	heart
37	chr22:31349800-31363800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr22:31349800-31363800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr22:31349800-31363800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr22:31349800-31363800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr22:31349800-31364200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr22:31350400-31364200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr22:31350600-31363000	Weak transcription	Psoas Muscle	Psoas
44	chr22:31350800-31363000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr22:31350800-31363800	Weak transcription	Brain Anterior Caudate	brain
46	chr22:31351000-31360400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr22:31351000-31363600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr22:31351000-31364400	Weak transcription	Ovary	ovary
49	chr22:31351400-31362200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr22:31351600-31359400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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