Variant report

Variant	rs9621131
Chromosome Location	chr22:31298668-31298669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SMTN-4	chr22:31298206-31298768	NONHSAT084815

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11089483	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11089485	1.00[CEU][hapmap]
rs12166075	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12166445	1.00[EUR][1000 genomes]
rs12166521	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12166797	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12167130	1.00[EUR][1000 genomes]
rs12168605	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12168997	1.00[EUR][1000 genomes]
rs12169136	1.00[EUR][1000 genomes]
rs13433649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989109	1.00[EUR][1000 genomes]
rs16989230	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2232171	1.00[EUR][1000 genomes]
rs2232180	1.00[EUR][1000 genomes]
rs2269896	0.84[YRI][hapmap]
rs28428739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35239241	1.00[EUR][1000 genomes]
rs56686418	1.00[EUR][1000 genomes]
rs5994374	1.00[EUR][1000 genomes]
rs7284605	1.00[EUR][1000 genomes]
rs9619138	1.00[EUR][1000 genomes]
rs9619139	1.00[EUR][1000 genomes]
rs9619140	1.00[EUR][1000 genomes]
rs9619152	1.00[EUR][1000 genomes]
rs9619154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621106	1.00[EUR][1000 genomes]
rs9621111	1.00[EUR][1000 genomes]
rs9621121	1.00[EUR][1000 genomes]
rs9621129	1.00[EUR][1000 genomes]
rs9621146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621151	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31265200-31299400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:31274200-31308400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr22:31278400-31301600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr22:31278600-31321400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:31278800-31301600	Weak transcription	A549	lung
6	chr22:31283000-31306600	Weak transcription	Fetal Heart	heart
7	chr22:31283400-31304000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr22:31283600-31318400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr22:31284400-31308400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr22:31284800-31306600	Weak transcription	Colonic Mucosa	Colon
11	chr22:31286400-31299200	Weak transcription	Liver	Liver
12	chr22:31286400-31304000	Weak transcription	Ovary	ovary
13	chr22:31287200-31299200	Weak transcription	Esophagus	oesophagus
14	chr22:31287400-31300400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr22:31288400-31316400	Weak transcription	Thymus	Thymus
16	chr22:31290000-31305200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr22:31290000-31305200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr22:31290200-31299400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr22:31290200-31303800	Weak transcription	Gastric	stomach
20	chr22:31290200-31305000	Weak transcription	Pancreas	Pancrea
21	chr22:31290200-31308400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr22:31290400-31316600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr22:31290600-31299400	Weak transcription	Right Ventricle	heart
24	chr22:31290600-31316200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr22:31290800-31320600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr22:31291000-31316200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr22:31291200-31299200	Weak transcription	Primary T cells from cord blood	blood
28	chr22:31291200-31299200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr22:31291200-31300000	Weak transcription	NHDF-Ad	bronchial
30	chr22:31291200-31302200	Weak transcription	Brain Substantia Nigra	brain
31	chr22:31291200-31302600	Weak transcription	K562	blood
32	chr22:31291200-31316200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr22:31291400-31298800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr22:31291400-31301800	Weak transcription	Placenta	Placenta
35	chr22:31291400-31315400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr22:31292400-31301400	Strong transcription	Fetal Intestine Large	intestine
37	chr22:31293800-31310200	Weak transcription	Hela-S3	cervix
38	chr22:31294200-31302400	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr22:31294400-31299000	Strong transcription	HSMM	muscle
40	chr22:31294800-31300800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr22:31294800-31309400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr22:31295400-31298800	Weak transcription	Primary B cells from cord blood	blood
43	chr22:31295400-31299000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr22:31295400-31299000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr22:31295400-31299400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr22:31295400-31301400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr22:31295400-31321000	Weak transcription	HSMMtube	muscle
48	chr22:31295600-31299000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr22:31295600-31299800	Weak transcription	Fetal Brain Male	brain
50	chr22:31296200-31298800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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