Variant report

Variant	rs9619152
Chromosome Location	chr22:31315062-31315063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11089483	1.00[EUR][1000 genomes]
rs12166075	1.00[EUR][1000 genomes]
rs12166445	1.00[EUR][1000 genomes]
rs12166521	1.00[EUR][1000 genomes]
rs12166797	1.00[EUR][1000 genomes]
rs12167130	1.00[EUR][1000 genomes]
rs12168605	1.00[EUR][1000 genomes]
rs12168997	1.00[EUR][1000 genomes]
rs12169136	1.00[EUR][1000 genomes]
rs12170790	1.00[EUR][1000 genomes]
rs13433649	1.00[EUR][1000 genomes]
rs16989109	1.00[EUR][1000 genomes]
rs16989230	1.00[EUR][1000 genomes]
rs2232171	1.00[EUR][1000 genomes]
rs2232180	1.00[EUR][1000 genomes]
rs28428739	1.00[EUR][1000 genomes]
rs35239241	1.00[EUR][1000 genomes]
rs56686418	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56715005	1.00[ASN][1000 genomes]
rs58583935	0.89[ASN][1000 genomes]
rs59148334	1.00[ASN][1000 genomes]
rs5994374	1.00[EUR][1000 genomes]
rs5997890	1.00[EUR][1000 genomes]
rs61151878	0.81[ASN][1000 genomes]
rs7284605	1.00[EUR][1000 genomes]
rs9619138	1.00[EUR][1000 genomes]
rs9619139	1.00[EUR][1000 genomes]
rs9619140	1.00[EUR][1000 genomes]
rs9619154	1.00[EUR][1000 genomes]
rs9621106	1.00[EUR][1000 genomes]
rs9621111	1.00[EUR][1000 genomes]
rs9621121	1.00[EUR][1000 genomes]
rs9621129	1.00[EUR][1000 genomes]
rs9621131	1.00[EUR][1000 genomes]
rs9621146	1.00[EUR][1000 genomes]
rs9621150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31278600-31321400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:31283600-31318400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr22:31288400-31316400	Weak transcription	Thymus	Thymus
4	chr22:31290400-31316600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr22:31290600-31316200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr22:31290800-31320600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr22:31291000-31316200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr22:31291200-31316200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr22:31291400-31315400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr22:31295400-31321000	Weak transcription	HSMMtube	muscle
11	chr22:31299600-31316600	Weak transcription	NHEK	skin
12	chr22:31299800-31317000	Weak transcription	Brain Angular Gyrus	brain
13	chr22:31300200-31316200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr22:31300200-31320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr22:31304200-31317200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr22:31304200-31318000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr22:31304200-31320800	Weak transcription	Gastric	stomach
18	chr22:31304400-31317000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr22:31304600-31320400	Weak transcription	Lung	lung
20	chr22:31304800-31316000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr22:31305600-31317400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr22:31305600-31319200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr22:31305600-31320200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr22:31305800-31317200	Weak transcription	Ovary	ovary
25	chr22:31305800-31317200	Weak transcription	Pancreas	Pancrea
26	chr22:31305800-31318200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr22:31306000-31319600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr22:31306800-31315400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr22:31306800-31320200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr22:31306800-31320200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr22:31307400-31315200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr22:31311400-31319800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr22:31312000-31316000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr22:31312000-31320000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr22:31312200-31317200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr22:31312200-31317600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr22:31312200-31320000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr22:31312400-31316400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr22:31312400-31316600	Weak transcription	Adipose Nuclei	Adipose
40	chr22:31312400-31317200	Weak transcription	Fetal Intestine Small	intestine
41	chr22:31312600-31317600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr22:31313000-31319800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr22:31315000-31316600	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links