Variant report

Variant	rs9619154
Chromosome Location	chr22:31323784-31323785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31316913..31319596-chr22:31321963..31324109,2	K562	blood:
2	chr22:31323613..31326465-chr22:31353676..31355582,2	K562	blood:

Variant related genes	Relation type
ENSG00000235989	Chromatin interaction
ENSG00000133422	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11089483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12166075	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12166445	1.00[EUR][1000 genomes]
rs12166521	1.00[EUR][1000 genomes]
rs12166797	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12167130	1.00[EUR][1000 genomes]
rs12168605	1.00[EUR][1000 genomes]
rs12168997	1.00[EUR][1000 genomes]
rs12169136	1.00[EUR][1000 genomes]
rs12170790	1.00[EUR][1000 genomes]
rs13433649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989109	1.00[EUR][1000 genomes]
rs16989230	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2232171	1.00[EUR][1000 genomes]
rs2232180	1.00[EUR][1000 genomes]
rs28428739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35239241	1.00[EUR][1000 genomes]
rs56686418	1.00[EUR][1000 genomes]
rs5994374	1.00[EUR][1000 genomes]
rs5997890	1.00[EUR][1000 genomes]
rs7284605	1.00[EUR][1000 genomes]
rs9619138	1.00[EUR][1000 genomes]
rs9619139	1.00[EUR][1000 genomes]
rs9619140	1.00[EUR][1000 genomes]
rs9619152	1.00[EUR][1000 genomes]
rs9621106	1.00[EUR][1000 genomes]
rs9621111	1.00[EUR][1000 genomes]
rs9621121	1.00[EUR][1000 genomes]
rs9621129	1.00[EUR][1000 genomes]
rs9621131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621146	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621151	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31317600-31324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr22:31317600-31364000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:31318400-31324400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr22:31318400-31342200	Weak transcription	Right Atrium	heart
5	chr22:31318600-31328000	Weak transcription	Fetal Heart	heart
6	chr22:31318600-31329000	Weak transcription	Stomach Mucosa	stomach
7	chr22:31318800-31324200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr22:31319000-31333200	Strong transcription	Primary T cells from cord blood	blood
9	chr22:31319000-31343600	Strong transcription	Fetal Stomach	stomach
10	chr22:31319200-31324000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr22:31319200-31324800	Strong transcription	Fetal Brain Female	brain
12	chr22:31319200-31338600	Strong transcription	Thymus	Thymus
13	chr22:31319200-31344000	Strong transcription	Fetal Intestine Small	intestine
14	chr22:31319200-31345200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr22:31319200-31347400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr22:31319200-31350800	Strong transcription	Brain Germinal Matrix	brain
17	chr22:31319200-31351800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr22:31319400-31327600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr22:31319400-31336400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr22:31319400-31337600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr22:31319400-31342200	Strong transcription	Fetal Muscle Leg	muscle
22	chr22:31319600-31326000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr22:31319600-31327000	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr22:31319600-31342000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr22:31319600-31342200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr22:31319600-31343200	Strong transcription	Placenta	Placenta
27	chr22:31319600-31345200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr22:31319800-31342200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr22:31319800-31343000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr22:31319800-31343200	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr22:31319800-31353200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr22:31319800-31355800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr22:31320000-31342000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr22:31320000-31342200	Strong transcription	Stomach Smooth Muscle	stomach
35	chr22:31320000-31342400	Strong transcription	Brain Cingulate Gyrus	brain
36	chr22:31320000-31344000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr22:31320000-31354600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr22:31320000-31355600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr22:31320200-31324800	Strong transcription	Brain Hippocampus Middle	brain
40	chr22:31320200-31336400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr22:31320200-31336800	Strong transcription	Fetal Muscle Trunk	muscle
42	chr22:31320200-31340200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr22:31320200-31342200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr22:31320200-31343000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr22:31320200-31353400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr22:31320200-31354800	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr22:31320200-31355600	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr22:31320200-31355800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr22:31320400-31324600	Strong transcription	Aorta	Aorta
50	chr22:31320400-31336800	Strong transcription	Lung	lung

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