Variant report

Variant	rs5997890
Chromosome Location	chr22:31554155-31554156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31553944..31555676-chr22:31738486..31740401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100105	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11089483	1.00[EUR][1000 genomes]
rs11089485	1.00[CEU][hapmap]
rs12157693	1.00[YRI][hapmap]
rs12157806	1.00[YRI][hapmap]
rs12158256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12158662	1.00[EUR][1000 genomes]
rs12166075	1.00[EUR][1000 genomes]
rs12167130	1.00[EUR][1000 genomes]
rs12168605	1.00[EUR][1000 genomes]
rs12170790	1.00[EUR][1000 genomes]
rs16989230	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2232171	1.00[EUR][1000 genomes]
rs2232180	1.00[EUR][1000 genomes]
rs28428739	1.00[EUR][1000 genomes]
rs35239241	1.00[EUR][1000 genomes]
rs56686418	1.00[EUR][1000 genomes]
rs5994374	1.00[EUR][1000 genomes]
rs5997936	1.00[EUR][1000 genomes]
rs61736799	1.00[EUR][1000 genomes]
rs9619152	1.00[EUR][1000 genomes]
rs9619154	1.00[EUR][1000 genomes]
rs9621146	1.00[EUR][1000 genomes]
rs9621150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459871	chr22:31551160-31680624	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	nsv588893	chr22:31551160-31680624	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31545200-31555400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr22:31545200-31555600	Weak transcription	Fetal Intestine Small	intestine
3	chr22:31551200-31555600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr22:31552000-31555200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr22:31552000-31555400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr22:31552000-31555400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr22:31552000-31555400	Weak transcription	HMEC	breast
8	chr22:31552000-31555600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr22:31552000-31555600	Weak transcription	Colon Smooth Muscle	Colon
10	chr22:31552000-31555600	Weak transcription	HSMMtube	muscle
11	chr22:31552000-31555600	Weak transcription	NHDF-Ad	bronchial
12	chr22:31552200-31555400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr22:31552200-31555400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr22:31552200-31555400	Weak transcription	NHEK	skin
15	chr22:31552200-31555600	Weak transcription	Adipose Nuclei	Adipose
16	chr22:31552200-31555600	Weak transcription	Colonic Mucosa	Colon
17	chr22:31552200-31555600	Weak transcription	Fetal Muscle Leg	muscle
18	chr22:31552200-31555600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr22:31552200-31555600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr22:31552200-31555600	Weak transcription	HSMM	muscle
21	chr22:31552200-31555600	Weak transcription	NHLF	lung
22	chr22:31552200-31555800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr22:31552400-31555400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr22:31552400-31555400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr22:31552400-31555600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr22:31552400-31555600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr22:31552400-31555600	Weak transcription	Ovary	ovary
28	chr22:31552400-31555600	Weak transcription	Psoas Muscle	Psoas
29	chr22:31552400-31555600	Weak transcription	Right Atrium	heart
30	chr22:31552400-31555600	Weak transcription	HUVEC	blood vessel
31	chr22:31552600-31555400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr22:31552600-31555600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr22:31552600-31555800	Weak transcription	Aorta	Aorta

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